BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490960
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36740.1 | Symbols: HB-5, ATHB40, HB40 | homeobox protein 40... 1214 0.0
AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein... 89.8 4e-17
> AT4G36740.1 | Symbols: HB-5, ATHB40, HB40 | homeobox protein
40 | chr4:17314559-17316374 REVERSE LENGTH=801
Length=801
Score = 1214 bits (657), Expect = 0.0
Identities = 764/813 (94%), Gaps = 17/813 (2%)
Strand=Plus/Plus
Query 1 ACTTCTCACATTTCATAAAAAGTGAGACAAATTAAGACAGAGATAGAGAGATCCAAGAAC 60
||||||||||||||||||||||||||||||||| | | ||| | ||||||||||||||||
Sbjct 4 ACTTCTCACATTTCATAAAAAGTGAGACAAATT-A-A-AGACAGAGAGAGATCCAAGAAC 60
Query 61 ATGAACCACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGTC 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAACTACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGTC 120
Query 121 TACACTCAGTTAGTACCACAACCAGGAGAAGTGAAGCAACCGAAGCGGAGGAGGAAGAAG 180
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TACACTCAGATAGT---ACAACCAGGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAG 177
Query 181 AGTAAAGGA-GCGTTGGCTTCCGGAGACGGAAGCAACAGTTTGTTTAGGAAGAGGAAGCT 239
| |||||| || ||||||||| ||| ||| ||||| |||||||||| |||||||||||
Sbjct 178 ACCAAAGGATCCG-TGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGCT 236
Query 240 AACCGATGAACAAGTGAACATGTTGGAGATGAGTTTTGGTGATGAGCACAAACTTGAGTC 299
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 237 GACCGATGAACAAGTGAACATGTTGGAGATGAGTTTTGGGGATGAACACAAACTTGAGTC 296
Query 300 GGAGAGGAAAGATAGACTTGCGGCGGAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTTG 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GGAGAGGAAAGATAGACTTGCGGCAGAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTTG 356
Query 360 GTTTCAGAACCGTCGTGCACGGTGGAAGAACAAAAGGCTCGAGGAGGAGTACAATAAACT 419
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 GTTTCAGAACCGTCGCGCACGGTGGAAGAACAAAAGGCTCGAGGAAGAGTACAATAAACT 416
Query 420 CAAGAACTCACATGATAACGTCGTTGTCGACAAGTGCCGACTTGAATCTGAGGTTATTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAAGAACTCACATGATAACGTCGTTGTCGACAAGTGCCGACTTGAATCTGAGGTTATTCA 476
Query 480 GCTCAAAGAACAACTCTATGACGCAGAGAGGGAAATCCAAAGATTAGCAGAAAGAGTAGA 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTCAAAGAACAACTCTATGATGCAGAGAGGGAAATCCAAAGATTAGCAGAAAGAGTAGA 536
Query 540 AGTAGGCTCAAGCAACAGTCCGATTTCGTCTTCTGTTTCCGTCGAAGCTAATGAAGCGCC 599
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 537 AGGAGGCTCAAGCAACAGTCCAATTTCGTCTTCCGTTTCCGTCGAAGCTAATGAAACGCC 596
Query 600 ATTTTTCGGAGACTATAAAGTCGGAGATGATGGCGATGACTATGATAACTTCTTTTATCC 659
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 597 ATTTTTTGGAGACTATAAAGTCGGAGATGATGGCGATGACTATGATCACTTGTTTTATCC 656
Query 660 GGTACCGGAAAACAGTTACATCGATGAAGCGGAATGGATGAATCTATACATATAAAATTA 719
||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 657 GGTGCCGGAAAATAGTTACATCGATGAAGCGGAATGGATGAGTCTATACATATAAA-TTA 715
Query 720 CTAGCTTAATGTGATATTTTAATTATATCAAGTTAGTATTGTGAATTAGGGAAGCATTAT 779
|||||||||||| | || | ||||||||||||||||| ||||||||||||||||| ||
Sbjct 716 CTAGCTTAATGT-A-AT---A-TTATATCAAGTTAGTATCGTGAATTAGGGAAGCAT-AT 768
Query 780 TT-TAAGTAAATTTAGTAGATTATATAACTGTT 811
|| |||||||||||| |||||||||||||||||
Sbjct 769 TTCTAAGTAAATTTACTAGATTATATAACTGTT 801
> AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein
16 | chr4:18571359-18573084 REVERSE LENGTH=1518
Length=1518
Score = 89.8 bits (48), Expect = 4e-17
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 325 GAGCTAGGGCTTGACCCTCGTCAAGTTGCCGTTTGGTTTCAGAACCGTCGTGCACGGTGG 384
||||| || ||| | ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 584 GAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 643
Query 385 AAGAACAAAA 394
|| |||||||
Sbjct 644 AA-AACAAAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5