BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490963
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36710.1 | Symbols: | GRAS family transcription factor | ch... 2422 0.0
> AT4G36710.1 | Symbols: | GRAS family transcription factor |
chr4:17305758-17307643 FORWARD LENGTH=1886
Length=1886
Score = 2422 bits (1311), Expect = 0.0
Identities = 1630/1777 (92%), Gaps = 50/1777 (3%)
Strand=Plus/Plus
Query 1 AAAAAACGGAATCATATACAAATCATTGTCAATCAGAttttttttCGTGTATACATTATT 60
||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||
Sbjct 25 AAAAAACGGAATCATATACAAATCATTGTCAATCAGA--TTGTTTCGTGTATA-AATATT 81
Query 61 ATTCTGT-AAACCAAATAAACCCGGATTATACACGGTTCCCAAAGTTGAAATCttttttt 119
||||||| |||||||| |||||||||| | |||||||| ||||||||||||||
Sbjct 82 ATTCTGTAAAACCAAACAAACCCGGATCAGACACGGTTACCAAAGTTGAAATC------- 134
Query 120 tttttttttGCACGCACTCCCTCAAAGATAAAAAGCTTACCACTCTCACCTTTCAAAAGC 179
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TCTTTATTTGCACGCACTCACTCAAAGATAAAAAGCTTACCACTCTCACCTTTCAAAAGC 194
Query 180 CCCGCCACcttcttcttct--c-cacac-----------ac--aaag----aaa----tt 215
||||||||||||||||||| | ||||| || |||| ||| ||
Sbjct 195 CCCGCCACCTTCTTCTTCTCCCACACACAAAGAAAAAAGACAGAAAGAAAAAAACTTTTT 254
Query 216 ttcttttc--taaaggtttcacctttcttcttcttcttAACAACACAACACATGAAAATC 273
|||||||| |||||| | |||||||| | ||||||||||| ||||||||||||||||||
Sbjct 255 TTCTTTTCGTTAAAGGCTCCACCTTTC-T-TTCTTCTTAAC-ACACAACACATGAAAATC 311
Query 274 CCAGCTTCTTCTCCTCAAGACACGA-C--CAACAACAACAACACTAACAGTACTGATAGT 330
|| || || |||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 312 CCTGCATCATCTCCTCAAGACACGACCAACAACAACAACAACACTAATAGTACTGATAGT 371
Query 331 AATCACTTATCAATGGACGAACATGTCATGCGTTCTATGGATTGGGATTCTATCATGAAA 390
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 372 AATCACTTATCAATGGACGAACATGTCATGCGTTCAATGGATTGGGATTCCATCATGAAA 431
Query 391 GAATTAGAGCTTGATGATGATTCAGCTCCTAATTC-TTTGAAAACCGGTTTTACTACAAC 449
||||| ||||||||||| ||||| |||||||| || || ||||||||||| || |||||
Sbjct 432 GAATTGGAGCTTGATGACGATTCTGCTCCTAACTCACTT-AAAACCGGTTTCACCACAAC 490
Query 450 CACCACCACTGATTCTACTATTTTGCCTCTTTACGCCGTCGATTCAAATCTCCCTGGCTT 509
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CA-CA--ACAGATTCTACTATTTTGCCTCTTTACGCCGTCGATTCAAATCTCCCTGGCTT 547
Query 510 TCCCGATCAGATTCAACCGTCCGATTTCGAATCATCATCCGATGTTTATCCTGGTCAGAA 569
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 548 TCCCGATCAGATTCAACCGTCGGATTTCGAATCGTCTTCCGATGTTTATCCTGGTCAGAA 607
Query 570 CCAAACAACCGGGTACGGGTTCAATTCTCTTGATAGTGTCGACAATGGAGGATTTGATTT 629
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 608 CCAAACAACTGGGTACGGTTTTAATTCTCTTGATAGTGTCGACAATGGAGGATTTGATTT 667
Query 630 CATTGAAGATCTCATCCGAGTCGTGGATTGCGTTGAATCGGACGAGTTACAACTCGCTCA 689
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 668 CATTGAAGATCTCATCCGAGTCGTGGATTGTGTTGAATCGGACGAGTTACAACTCGCTCA 727
Query 690 GGTGCTTTTATCACGGCTTAATCAGCGGTTGAGATCTCCGGCGGGTAGAGCGTTACAGAG 749
|||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 728 GGTGGTTTTATCACGGCTTAATCAACGCTTGAGATCTCCGGCGGGTAGACCGTTACAGAG 787
Query 750 AGCTGCGTTTTACTTCAAGGAAGCTCTCGGTTCGCTTTTAACCGGATCAAACCGGAATCC 809
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 788 AGCTGCGTTTTACTTTAAGGAAGCTCTCGGTTCGTTTTTAACCGGATCAAACCGGAATCC 847
Query 810 GATCCGGTTATCTTCTTGGTCCGATATTGTTCAGAGGATCCGAGCGATCAAAGAATATTC 869
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 848 AATCCGGTTATCTTCTTGGTCCGAGATTGTTCAGAGGATCCGAGCGATTAAGGAATATTC 907
Query 870 CGGGATTTCTCCGATCCCTCTCTTCTCCCATTTCACGGCGAATCAAGCGATACTCGATTC 929
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 908 CGGGATTTCTCCGATCCCTCTCTTCTCTCATTTCACGGCGAATCAAGCGATACTCGATTC 967
Query 930 TTTGAGCTCGCAGTCGTCTTCTCCGTTTGTTCACGTGGTGGATTTCGATATCGGATTCGG 989
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 968 GTTGAGCTCGCAGTCGTCTTCTCCGTTTGTTCACGTGGTGGATTTTGAGATTGGATTCGG 1027
Query 990 TGGCCAATACGCATCGCTCATGAGAGAAATCACTGAGAAATCTGTTAGCGGCGGGTTTTT 1049
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 1028 TGGCCAATACGCATCGCTTATGAGAGAAATCACTGAGAAATCTGTAAGCGGTGGATTTTT 1087
Query 1050 AAGAGTTACGGCGGTGGTGGCGGAAGAGTGCGCCGTCGAGACGCGGCTGGTGAAAGAAAA 1109
|||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||
Sbjct 1088 AAGAGTTACGGCAGTGGTGGCGGAGGAGTGCGCCGTAGAGACGCGACTAGTGAAAGAAAA 1147
Query 1110 CCTAACTCAATTCGCGGCGGAGATGAAAATTCGTTTTCAGATTGAATTCGTGCTGATGAA 1169
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1148 CCTAACTCAATTCGCGGCGGAGATGAAAATTCGTTTCCAGATTGAGTTTGTGCTGATGAA 1207
Query 1170 GACTTTCGAGATGTTATCTTTCAAAGCGATTAGGTTCGTTGAGGGAGAGAGAACCGTCGT 1229
|||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1208 GACTTTTGAGATGTTATCTTTCAAAGCGATTAGGTTTGTTGAGGGGGAGAGGACCGTCGT 1267
Query 1230 TTTGATTTCTCCGGCGATATTTCGTCGTGTGAGTGGAATCACTGATTTCGTGAACAATCT 1289
||||||||| |||||||||||||||||| | ||||||||||||||||| || |||||| |
Sbjct 1268 TTTGATTTCCCCGGCGATATTTCGTCGTCTAAGTGGAATCACTGATTTTGTTAACAATTT 1327
Query 1290 ACGGAGAGTATCACCTAAAGTCGTCGTTTTCGTCGATAGCGAAGGATGGACGGAGATCGC 1349
|||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1328 ACGGAGAGTATCACCTAAGGTCGTTGTATTCGTGGATAGTGAAGGATGGACGGAGATCGC 1387
Query 1350 CGGATCTGGATCGTTCCGGCGTGAGTTTGTTAGTGCTCTTGAGTTTTACACGATGGTGCT 1409
|||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1388 CGGATCTGGATCATTCCGGCGAGAGTTTGTTAGCGCTCTTGAGTTCTACACGATGGTGCT 1447
Query 1410 GGAGTCGCTCGACGCTGCAGCTCCTCCCGGAGATTTGGTGAAGAAGATCGTTGAAGCGTT 1469
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1448 GGAGTCGCTCGACGCTGCAGCTCCTCCCGGAGATTTGGTGAAGAAGATAGTGGAAGCGTT 1507
Query 1470 TGTGCTGCGACCAAAGATCTCCGCGGCGGTGGAAACGGCTGCTGATAGGAGACACACCGG 1529
|| || ||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 1508 CGTTCTACGACCGAAGATCTCCGCTGCGGTAGAAACGGCGGCTGACAGGAGACACACCGG 1567
Query 1530 TGAGATGACATGGCGGGAAGC-TTTCTGCGCCGCCGGAATAAGGCCGATACAGCTAAGCC 1588
|| ||||| ||||||||||| ||| ||||||||||| || |||||||||||||||||||
Sbjct 1568 CGAAATGACTTGGCGGGAAGCGTTT-TGCGCCGCCGGGATGAGGCCGATACAGCTAAGCC 1626
Query 1589 AGTTCGCCGACTTTCAAGCTGAGTGTTTATTGGAGAAGGCGCAAGTTAGAGGATTCCACG 1648
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1627 AGTTCGCCGACTTTCAAGCTGAGTGTTTATTGGAGAAAGCGCAAGTTAGAGGATTCCACG 1686
Query 1649 TGGCGAAACGACAAGGAGAATTGGTGCTGTGCTGGCACGGAAGGGCACTTGTTGCCACGT 1708
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1687 TGGCGAAACGACAAGGAGAATTGGTGCTGTGCTGGCATGGAAGAGCACTTGTTGCCACAT 1746
Query 1709 CAGCTTGGCGGTTTTAGATAAACCGGGTTTGGTTTAA 1745
|||||||||||||||||||||||||||||||||||||
Sbjct 1747 CAGCTTGGCGGTTTTAGATAAACCGGGTTTGGTTTAA 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5