BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490964
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36700.1 | Symbols: | RmlC-like cupins superfamily protein ... 2475 0.0
> AT4G36700.1 | Symbols: | RmlC-like cupins superfamily protein
| chr4:17298200-17300367 REVERSE LENGTH=1842
Length=1842
Score = 2475 bits (1340), Expect = 0.0
Identities = 1519/1605 (95%), Gaps = 13/1605 (1%)
Strand=Plus/Plus
Query 1 AAAAAACAGAGCACAATGACTAGATTTACGGTATTGCCActctctgttcttcttcttctc 60
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 16 AAAAAACAGAGCACAATGACTAGATTTGCGGTATTGCCACTCTCTG---TTCTTCTTCTC 72
Query 61 gttctcttgttcctctGCACTGAGTCATTGGCTAAGTCGGAGGATTCGGAAGAAAACGAC 120
|||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||
Sbjct 73 GTTCTCTTGTTCCTCTGCACTGAGTCGTTGGCTAAGTCGGAGGAGTCTGAAGAATACGAC 132
Query 121 TTCCCCGTGCCGTCGTGCTGCGGGTTTTCGTCTCCTCTTCTGATAAAGAAAGATCAATGG 180
|| | ||||| || || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 133 GTCGCTGTGCCTTCATGTTGCGGGTTTTCGTCTCCTCTTCTGATTAAGAAAGATCAATGG 192
Query 181 AAACCAATCTTCGAGTCGAAGTTCGGACAGATCTCAACCGTACAAATCGGCAATGGATGC 240
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 193 AAACCAATCTTCGAGACGAAGTTTGGACAGATCTCAACCGTTCAAATCGGCAATGGATGC 252
Query 241 GGTGGAATGGGACCTTACAAAATACATTCCATAACGTTGGAGCCAAACACGCTTTTGCTG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 253 GGTGGAATGGGACCTTACAAGATACATTCCATAACGTTGGAGCCAAACACAATTTTGCTC 312
Query 301 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CCTCTTCTTCTTCATTCCGACATGGTCTTCTTCGTTGACTCTGGAAGTGGGATTCTGAAT 372
Query 361 TGGGTTGACGAGGAAGCGAAGAGTTCTGAGATCAGACTAGGGGACGTTTACAGGCTACGT 420
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 373 TGGGTTGACGAGGAAGCGAAGAGTACCGAGATCAGACTAGGAGACGTTTACAGGCTACGT 432
Query 421 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTTGATATTTTCCTTGGAACCAAACTT 480
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 433 CCCGGTTCGGTTTTCTACTTACAGAGCAAACCGGTGGATATCTTCCTTGGAACCAAACTT 492
Query 481 AGGCTTTACGCAATCTTCTCCAACAACGAGGAGTGTTTACATGATCCTTGCTTTGGTGCG 540
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 493 AAGCTTTACGCAATCTTCTCCAACAACGATGAGTGTTTACATGATCCTTGCTTTGGTGCC 552
Query 541 TATTCAAGTATTACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 600
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TATTCGAGTATCACAGATCTAATGTTTGGTTTTGATGAGACAATTCTCCAGTCAGCTTTT 612
Query 601 GGGGTTCCCGAGGGGATTATAGAGCTGATGAGGAATCGTACGAAGCCACCATTGATCGTG 660
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 613 GGGGTTCCTGAGGGGATTATAGAGCTGATGAGGAACCGTACGAAGCCACCATTGATCGTG 672
Query 661 AGTGATG-TGCTTTGCCCACCAGGTGTGGCTAACACATGGCAGCTCCAACCGCGATTACT 719
||||| | ||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 673 AGTGA-GACGCTTTGCACACCAGGTGTGGCCAACACTTGGCAGCTCCAACCGCGATTACT 731
Query 720 CAAA-TTCTTTGCTGGAAGCGCAGATTTGGTGGATAACaagaagaagaaagagaagaagg 778
||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 732 -AAAGCTCTTTGCTGGAAGTGCAGACTTGGTGGATAACAAGAAGAAGAAAGAGAAGAAAG 790
Query 779 agaagaaagagaaggtgaagaaagcaaagaCATTCAATGTTTTCGAATCCGAACCGGATT 838
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 791 AGAAGAAGGAGAAGGTGAAGAAAGCGAAGACATTCAATGTTTTCGAATCTGAACCGGATT 850
Query 839 TCGAGAGCCCTTACGGTCGTACTATAACGATTAATAGGAAGGATCTGAAAGTTTTAAAGG 898
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 851 TCGAGAGCCCCTACGGTCGTACTATAACGATTAACAGGAAGGATCTGAAAGTTTTAAAAG 910
Query 899 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGGTCGATGATGGGACCACACT 958
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 911 GCTCAATGGTTGGAGTTTCCATGGTGAATCTCACTCAAGGATCGATGATGGGACCGCACT 970
Query 959 GGAATCCATGGGCTTGCGAGATTTCAATTGTGTTGAAAGGAGCAGGAATGGTTAAGGTGC 1018
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |
Sbjct 971 GGAATCCATGGGCTTGCGAGATTTCGATTGTATTGAAAGGAGCAGGAATGGTTAGGGTTC 1030
Query 1019 TTAGGTCTTCGATATCATCAAACTCATCATCAGAGTGTAAGAACGTGAGGTTTAAGGTAG 1078
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1031 TTAGGTCTTCGATATCATCAAACACATCATCAGAGTGTAAGAACGTGAGGTTTAAAGTAG 1090
Query 1079 AAGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCATTCAACA 1138
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1091 AGGAAGGAGATATTTTCGCAGTTCCACGGTTACATCCAATGGCTCAAATGTCTTTCAACA 1150
Query 1139 ATGGCTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ATGACTCGTTAGTGTTCGTTGGGTTTACTACTTCAGCTAAGAATAACGAGCCGCAGTTCT 1210
Query 1199 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCGTCGCTTA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1211 TAGCCGGGGAGGACTCGGCTTTGCGGATGCTTGACCGGCAAGTATTGGCTGCATCGCTTA 1270
Query 1259 ACGTGAGTAGTGTGATGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1318
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 ATGTGAGTAGTGTGACGATTGATGGATTGTTGGGAGCTCAGAAGGAAGCTGTTATCTTGG 1330
Query 1319 AATGTCCTTCTTGTGCGGAAGGAGAGATGGAGAAGCTTAAGGTggagacggagacgaaga 1378
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct 1331 AATGTCATTCTTGTGCGGAAGGAGAGATAGAGAAGCTTAAGGTGGAGATAGAGAGGAAGA 1390
Query 1379 aaatagatgatgagaggaagaggagagatgatgaaaggaagaaagaagaagaagaggcga 1438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1391 AAATAGATGATGAGAGGAAGAGGAGACATGATGAAAGGAAGAAAGAAGAAGAAGAGGCGA 1450
Query 1439 agaaagaagaggaagagaggaggaaacgtgaagaagaagaagagaggaagCGGTGGCCAC 1498
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1451 AGAGAGAAGAGGAAGAGAGGAGGAAACGTGAAGAAGAAGAAGAGAAGAAGCGGTGGCCAC 1510
Query 1499 CTCAACAGCCACCACAACAAGAAGAACCTCTAG--AACCGCAACTACCGATGGAGAAAGA 1556
||||||| ||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct 1511 CTCAACAACCACCACAAGAAGAAGAAC-T-TAGGGAACGGCAACTACCGATGGAGAAAGA 1568
Query 1557 ATGGGAAATGGCAGGTGAAGAGGAGATGT-AAGCCGTAGAAGTAA 1600
||||||||||| |||||||||||||| || |||||| || |||||
Sbjct 1569 ATGGGAAATGGAAGGTGAAGAGGAGA-GTTAAGCCGGAGGAGTAA 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86093934675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5