BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490965
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, ... 2854 0.0
> AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17293992-17297722 REVERSE
LENGTH=1982
Length=1982
Score = 2854 bits (1545), Expect = 0.0
Identities = 1712/1790 (96%), Gaps = 21/1790 (1%)
Strand=Plus/Plus
Query 1 GAGAGAGAGGTAGACAACGTTGATTCCGGCGAAAAGATGACTGAATTCGAAGATCACGAG 60
|||| |||| |||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 78 GAGAAAGAGATAGAGAGCGTTGATTCCGGCGAAAAGATGTCTGAATTCGAAGATCACGAG 137
Query 61 GGAAACGGTACTGTTGCTGACGCGCTTTACG-CTGAAGAGAACGGTGGCCGCGGCGGCGA 119
||||||||||| |||||||||||| |||||| | |||||||| |||||||||| ||||||
Sbjct 138 GGAAACGGTACGGTTGCTGACGCGATTTACGAC-GAAGAGAATGGTGGCCGCGACGGCGA 196
Query 120 AATCGAGGATCAATTGGACTCGAAACCTaagagagaatcgcgtgaccatgaaagagagac 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 197 AATCGAGGATCAATTGGACTCGAAACCCAAGAGAGAATCGCGTGACCATGAAAGAGAGAC 256
Query 180 atcaagaagtaaagatagagaaagagagaagGGTCGTGATAGGGACAGAGAAAGGGACTC 239
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 257 ATCAAGAAGTAAAGATAGAGAAAGAGAGAAGGGTCGTGATAAGGACAGAGAAAGAGACTC 316
Query 240 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGATAAAGGCAAGGAGAGGAGTAGAGA 299
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 317 TGAAGTCTCTCGCCGAAGCAGGGATAGAGATGGAGAGAAAAGCAAGGAGAGGAGTAGAGA 376
Query 300 GAAAGACAGAG---ATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGTAG 356
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 377 CAAAGACAGAGATCATCGTGAGCGTCATCACAGAAGTAGTCGTCACAGGGATCATAGCAG 436
Query 357 GGACCGTAGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 416
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GGAGCGTGGTGAAAGAAGAGAACGTGGTGGTAGGGATGATGATGATTACCGTCGAAGCCG 496
Query 417 TGATCGTGACCATGATAGGCGTAGAGATGATCGAGGAGGTAGACGCAGTCGTCGATCTCG 476
||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 497 TGATCGTGACCATGATAGGCGGAGAGATGATAGAGGAGGAAGACGCAGTCGTCGATCTCG 556
Query 477 TTCTCGTTCAAAGGATAGATCT-------G----A-G---CGATCTCCATCGAAAAGTAA 521
||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 557 ATCTCGTTCAAAGGATAGATCTGAGCGCAGAACAAGGTCACGATCTCCATCGAAAAGTAA 616
Query 522 TAAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GCAGCGAGTCAGTGGATTCGATATGGCACCTCCAGCCTCTGCAATGTTAGCTGCTGGTGC 676
Query 582 TGCTGTTACAGGTCAAGTTCCTCCCGCACCACCAACTCTTCCTGGGGCTGGAATGTTTCC 641
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 677 TGCTGTTACAGGCCAAGTTCCTCCCGCTCCACCAACTCTTCCTGGGGCTGGAATGTTTCC 736
Query 642 CAACATGTTTCCGTTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 701
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CAACATGTTTCCATTGCCGACTGGACAGTCATTTGGGGGACTCTCTATGATGCCAATTCA 796
Query 702 GGCTATGACACAGCAGGCAACTAGGCATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 761
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 797 GGCTATGACACAGCAGGCAACTAGACATGCTCGCAGAGTCTATGTCGGTGGGCTTTCCCC 856
Query 762 TACGGCAAATGAACAGTCCGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 821
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TACGGCAAATGAACAGTCTGTGGCTACATTTTTTAGTCAAGTTATGGCTGCTGTTGGTGG 916
Query 822 TAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AAACACTGCTGGTCCAGGTGATGCAGTTGTTAATGTCTACATAAACCACGAGAAGAAGTT 976
Query 882 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGCTTTTGTGGAGATGCGATCTGTTGAAGAGGCAAGTAACGCTATGTCTTTGGATGGGAT 1036
Query 942 TATATTTGAGGGAGCTCCAGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1001
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TATATTTGAGGGAGCTCCGGTGAAGGTGAGGAGACCTAGTGACTATAACCCATCTCTAGC 1096
Query 1002 TGCAACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1061
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGCGACTCTTGGTCCAAGCCAGCCCAGTCCCCATCTAAACTTAGCTGCTGTTGGTCTGAC 1156
Query 1062 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TCCAGGTGCTTCTGGTGGGCTTGAGGGACCAGATCGTATTTTTGTTGGTGGACTTCCATA 1216
Query 1122 TTACTTCACTGAATCCCAAGTCAGGGAGTTGTTGGAGTCCTTTGGAGCCCTTAAGGGCTT 1181
||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1217 TTACTTCACGGAATCACAAGTGAGGGAGTTGTTGGAGTCCTTTGGAGGCCTCAAGGGCTT 1276
Query 1182 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TGATCTTGTAAAAGATCGAGAAACAGGGAACTCTAAAGGATATGCCTTTTGTGTGTACCA 1336
Query 1242 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 AGATCTTTCTGTTACAGATATCGCGTGCGCTGCCCTAAATGGTATCAAGATGGGAGATAA 1396
Query 1302 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCAACCAAAGCCTGAACAAGAGAG 1361
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1397 GACTCTTACAGTGAGACGTGCCAACCAGGGAACAATGCTACAAAAGCCTGAACAAGAGAA 1456
Query 1362 CGTATTATTGCATGCGCAGCAGCAAATTGCTTTTCAGAGGATTATGTTACAGCCTGGTGC 1421
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1457 CGTATTATTGCATGCACAGCAGCAAATAGCTTTTCAGAGGGTTATGTTACAGCCTGGTGC 1516
Query 1422 AATGGCAACAACTGTGGTATGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1481
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AGTGGCAACCACTGTGGTGTGTCTGACTCAAGTTGTTACTGAGGATGAGCTTAGAGATGA 1576
Query 1482 CGAGGAGTATGAAGATATAATGGAAGACATGAGACAAGAAGGCGGAAAGTTTGGTGCTTT 1541
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1577 TGAGGAGTATGGAGATATAATGGAAGACATGAGACAGGAAGGCGGAAAGTTTGGTGCTTT 1636
Query 1542 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGCCTGGCCTTGGCAA 1601
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1637 GACCAATGTTGTGATTCCGCGTCCAAGCCCCAATGGTGAGCCAGTGGCAGGCCTTGGCAA 1696
Query 1602 GGTGTTTTTGAAGTATGCCGATACAGATGGATCGACGAGGGCAAGAACCGGGATGAATGG 1661
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 1697 GGTGTTTTTGAAGTATGCCGATACAGATGGCTCGACTAGGGCAAGATTCGGGATGAATGG 1756
Query 1662 TAGGAAATTCGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1721
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 TAGGAAATTTGGAGGAAATGAAGTCGTTGCAGTGTATTACCCTGAAGACAAGTTTGAACA 1816
Query 1722 GGGTGATTATGGAGCCTGATGACTTTCTTTGTTTGCTTTCTATTACTTAA 1771
|||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1817 GGGTGATTATGGAGCCTGATCACTT-CTTTGTTTGCTTTCTATTACTTAA 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5