BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490968
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2270 0.0
> AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17292229-17293822 REVERSE LENGTH=1594
Length=1594
Score = 2270 bits (1229), Expect = 0.0
Identities = 1444/1546 (93%), Gaps = 22/1546 (1%)
Strand=Plus/Plus
Query 21 aaaaCCCTAAAGGCGTCTTCTTTT-TCGCCACCACTCTCCACAACACTCATTACTGCAAA 79
|||||||||||||||||| ||||| ||||||||||||||||||| || |||| |||| ||
Sbjct 46 AAAACCCTAAAGGCGTCTCCTTTTCTCGCCACCACTCTCCACAATACCCATTTCTGC-AA 104
Query 80 AATGGCTTCTTCTCGTATCTCTCTCCG-CTTAGTTCGCCGGTTTGCCTCAGCCGCCGCAG 138
|||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||| |
Sbjct 105 AATGGCTTCTTCTCGTATTTCTCTCCGCCTT-GTTCGCCGATTTGCCTCAGCCGCCGCTG 163
Query 139 ATGGTACAACCACCTCTCCGTCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTC 198
| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ACGGTACGACCACCGCTCCCTCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTC 223
Query 199 TCCGGAAAGAACACGATCCCGACAAAGCCCTTAAGATCTACGCCAATGTCTCCGATCACT 258
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 224 TCCGGAAAGAACACGATCCCGACAAAGCTCTTAAGATCTACGCCAATGTCTCCGATCACT 283
Query 259 CAGCTTCTCCTGTTTCATCTCGCTATGCTCAAGAGCTCACTGTTCGTCGCCTCGCCAAGT 318
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 284 CAGCCTCTCCTGTTTCATCTCGCTACGCCCAAGAGCTCACTGTTCGTCGCCTCGCCAAGT 343
Query 319 GTCGCCGTTTCTCAGACATCGAAACCCTAATTGAATCCCACAAAAACGATCCCAAAATCA 378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 344 GTCGCCGTTTCTCAGACATCGAAACCCTAATTGAATCCCACAAAAATGATCCCAAAATCA 403
Query 379 AAGAAGAACCTTTCTACTCTACGCTTATCAGATCTTATGGCCGAGCCTCTATGTTTGATC 438
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct 404 AAGAAGAACCTTTCTACTCTACGCTTATCAGATCTTACGGCCAAGCCTCTATGTTTAATC 463
Query 439 ACGCCATGAGAACTTTCGAGCAGATGGATCAGTATGGCACACCCAGATCAGCTGTTTCGT 498
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 464 ACGCCATGAGAACCTTCGAGCAGATGGATCAATACGGCACACCCAGATCAGCTGTTTCCT 523
Query 499 TCAACGCCTTACTCAACGCCTGTCTTCATTCCAAGAAGTTCGATAAAGTCCCCCAACTGT 558
|||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 524 TCAACGCCTTGCTCAACGCTTGTCTCCATTCCAAGAATTTCGATAAAGTCCCCCAACTGT 583
Query 559 TCGACGAAATTCCTCAAAGGTACAATAAAATCGTCCCTGACAAAATCTCTTATGGTATAT 618
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 584 TCGACGAAATTCCTCAGAGGTACAATAAGATCATCCCTGACAAAATCTCTTACGGTATAT 643
Query 619 TGATTAAGTCATACTGTGACTCTGGTTCCCCTCAAAAGGCGATTGAGATTATGAGGCAGA 678
|||||||||||||||||||||||||| ||||| |||| || |||||||||||||| ||||
Sbjct 644 TGATTAAGTCATACTGTGACTCTGGTACCCCTGAAAAAGCCATTGAGATTATGAGACAGA 703
Query 679 TGCAAGGTAAAGGCATGGAAGTCACTACCATTGCTTTCACCACCATTTTGAGTTCCTTGT 738
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 704 TGCAAGGTAAAGGCATGGAAGTTACTACCATTGCTTTCACCACCATTTTGAGTTCATTGT 763
Query 739 ATAAGAAAGGTGAACTCGAGGTTGCGGA-AAGCTTGTGGAATGAGATGGTGAATAAAGGC 797
||||||||||||| |||||||| || || || ||||||||||||||||||||| ||||||
Sbjct 764 ATAAGAAAGGTGAGCTCGAGGTAGCTGATAA-CTTGTGGAATGAGATGGTGAAGAAAGGC 822
Query 798 TGTGAATTAGATAATGCAGCGTATAATGTCCGTATTATGAGTGCTCAGAAGGAAAGCCCT 857
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 823 TGTGAATTGGATAATGCAGCGTATAATGTTCGTATAATGAGTGCTCAAAAGGAAAGCCCT 882
Query 858 GAAAGAGTTAAGGAGTTGATCGAAGAAATGAGCACTATGGGATTGAAACCCGATACGATT 917
|||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||
Sbjct 883 GAAAGAGTTAAGGAGTTGATTGAAGAAATGAGTAGTATGGGATTGAAACCTGATACGATT 942
Query 918 AGCTATAACTATCTTATGACTGCTTATTGCGAGAGAGGAATGTTGGATGAAGCTAAGAAA 977
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 943 AGCTATAACTATCTTATGACTGCGTATTGTGAGAGAGGAATGTTGGACGAAGCTAAGAAA 1002
Query 978 GTGTATGAAGGACTTGAAGGAAACAACTGTGCTCCCAACTCAGCTACTTTTAGGACATTG 1037
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1003 GTGTATGAAGGACTTGAAGGTAACAACTGTGCTCCCAACGCAGCTACTTTTAGGACATTG 1062
Query 1038 ATATTTCATCTGTGTTATAGCCGATTGTATGAGCAAGGCTACGCCATCTTCAAGAAGAGT 1097
||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1063 ATATTTCATCTTTGTTATAGCCGATTGTACGAGCAAGGCTATGCGATCTTCAAGAAGAGT 1122
Query 1098 GTGTATATGCACAAGATTCCAGATTTCAACACTTTGAAGCACTTGGCTGCGGGATTAGTG 1157
||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||
Sbjct 1123 GTGTATATGCACAAGATTCCAGATTTCAACACTTTGAAGCATTTGGTTGTGGGATTGGTG 1182
Query 1158 GAGAACAAGAAAATAGATGACGCTAAAGGGTTGATTAGAACGGTGAAGAAGAAATTCCCT 1217
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GAGAACAAGAAAAGAGATGACGCTAAAGGGTTGATTAGAACGGTGAAGAAGAAATTCCCT 1242
Query 1218 CCGAGTTTCATGAATGCGTGGAAGAAACTTGAGGAGGAACTCGGGCTGTATTCGAAAACC 1277
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1243 CCGAGTTTCTTGAATGCGTGGAAGAAACTCGAGGAGGAACTCGGGCTGTATTCAAAAACC 1302
Query 1278 GATGCTTCTCCATCTTCTGCACAAGAGGCTGCTGCT--T-AATAGCTCAATAGCATTGCG 1334
||||||| ||||||||||||| |||||||||||||| | |||||||||| |||||| ||
Sbjct 1303 GATGCTTTTCCATCTTCTGCAAAAGAGGCTGCTGCTGCTTAATAGCTCAAGAGCATTTCG 1362
Query 1335 ATTGAACATCTTAATTTGTTGCTTGAGCTGTTTAAAGACTTGTTGAAAACTATGATCTAG 1394
||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 1363 ATTGAACATCTTATTTTGTTGCTTGA-------A--GACTTGTTGAAAACTATGATCTAG 1413
Query 1395 TATGCAGGTTTATTTATAAGCTGCTCGTGCATTTTTCTCTTTCTTCATAAATTAGCTTGT 1454
|||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1414 TATGCAGGTTTATTTATAAGCTGCTCCTGCATTTTTCT-TTCCT-CATAAATTAGCTTGT 1471
Query 1455 AAAAGCTTCAAATTTTTGTTGTTGGAATCTCTAGAATTCCAAAGTCAACAATTTTCAGGT 1514
|||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1472 AAAAGCTTGACGGTTT-GTTGTTGGAATCTCTAGAATTCCATAGTCAACAATTTTCAGGT 1530
Query 1515 TCATATAGTTTCACTGCTTTGTTCTACACGCTTGTGCTTCATGATG 1560
|||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1531 TCATATAGTT-CACTGCTTTGTTCTACACACTTGTGCTTCATGATG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5