BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490970
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36660.1 | Symbols: | Protein of unknown function (DUF1195)... 1199 0.0
AT5G65650.1 | Symbols: | Protein of unknown function (DUF1195)... 189 4e-47
> AT4G36660.1 | Symbols: | Protein of unknown function (DUF1195)
| chr4:17285732-17287429 REVERSE LENGTH=909
Length=909
Score = 1199 bits (649), Expect = 0.0
Identities = 797/862 (92%), Gaps = 36/862 (4%)
Strand=Plus/Plus
Query 5 CTCAGATTTAACAAAATCGAGACGACACATCCCCGATT-ACACTGAATCTACTGAAATCG 63
||||||||||||||||||||| |||||| | ||| ||| | |||||||||||||||||||
Sbjct 11 CTCAGATTTAACAAAATCGAGCCGACACTTTCCCAATTGA-ACTGAATCTACTGAAATCG 69
Query 64 ATTCACGAGAGCTCAGATTTGGTGTTAGCATCACTCGCTAAGCAAGATTATTGAG-TGTA 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 70 ATTCACGAGAGCTCAGATTTGGTGTTAGCATCACTCACTAAGCAAGATTATTGAGTTGTA 129
Query 123 ATTTGTATTTGAGATCGAGATGAAGGAGGACGATGCATTG-C--CGACGACGACGACTGG 179
||| |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 130 ATTAGTATTTGAGATCAAGATGAAGGAGGACGATGCATTGCCGACGACGACGACGACTGG 189
Query 180 TACGGCGACGGGAACAGCTATCGCGAATTCGAAGAAGGAGAA-CTCTGACTCGGTCTTAT 238
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
Sbjct 190 TACGGCGACGGGAACAGCTATGGCGAATTCGAAGAAGGA-AAGCTCTGACTCGGTCTTGT 248
Query 239 TTGGAAGAGGTCGATACAAGTTCTGGGCGTTTGCTGCGATTTTGCTTTTGGCTTTTTGGT 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TTGGAAGAGGTCGATATAAGTTCTGGGCGTTTGCTGCGATTTTGCTTTTGGCTTTTTGGT 308
Query 299 CGATGTTCACTGGCACCGTCACTCTCCGGTTATCTACCGGGAATCTAAACCGGTTATCGG 358
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 309 CGATGTTTACTGGCACCGTCACTCTCCGGTTATCTACCGGGAATCTGAACCGGTTATCGG 368
Query 359 AAGATCTAGGGATTCCGAACTATGAAAACCTTGACGTTCTGGAAATGGAGGAGAGGGAGA 418
|||||||||||||||||||||| || || || ||||||||||||||||||||||| ||||
Sbjct 369 AAGATCTAGGGATTCCGAACTACGATAATCTCGACGTTCTGGAAATGGAGGAGAGAGAGA 428
Query 419 AAGTGGTGAAGCATATGTGGGATGTGTATACAAATAGTCGTCGGATCAAATTGCCTAGAT 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 429 AAGTGGTGAAGCATATGTGGGATGTGTATACTAATAGTCGTCGGATCAAATTGCCTAGAT 488
Query 479 TTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTGGGGTTA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTGGGGTTA 548
Query 539 GAGAAGCTGCTATTGGTGAAATCGCCAAGATGTCGGTGCGGTCTATTACTCTTGATCCAC 598
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 549 GAGAAGCTGCTATTGGTGAAATCGCCAAGATGTCGGCGCGGTCGATCACTCTTGATCCAC 608
Query 599 CTCCTTCTAGATCAATGAGTGCAAGGGATTTGGGAAGAAACTTGAAGAGAATTCTACACA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTCCTTCTAGATCAATGAGTGCAAGGGATTTGGGAAGAAACTTGAAGAGAATTCTACACA 668
Query 659 AGCCAGCAGCTAGTAGCTGATGATGATATTGGTAACACACGTTTTTACAGTCTACTTACT 718
||||||||||||||||||||| ||||||||||||||| | | ||||||| |||
Sbjct 669 AGCCAGCAGCTAGTAGCTGATAATGATATTGGTAACATA--T-------GTCTACT-ACT 718
Query 719 TCCTGAAGCCAAAAGATGAACTACCAAATGGATAGAGTTCATTTT-----T----T-C-- 766
| |||||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 719 TGCTGAAGCCAAAAGATGAACTACCAAATGGATAGATTTCATTTTGGGACTAAAATTCAA 778
Query 767 -----GAAATCAAATTGCTCCTTTTATATTCTATCGATTGGTAATTACATAGAGCTACTT 821
||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||
Sbjct 779 TTTTCGAAATCAAATTGCTCTTTTTACATTCTATCG-TTGGTAATTATATAGAGCTACTT 837
Query 822 TTATAAATATATGTAGAAACAA 843
|||||||||||||||||| |||
Sbjct 838 TTATAAATATATGTAGAAGCAA 859
> AT5G65650.1 | Symbols: | Protein of unknown function (DUF1195)
| chr5:26239502-26241515 FORWARD LENGTH=964
Length=964
Score = 189 bits (102), Expect = 4e-47
Identities = 263/339 (78%), Gaps = 17/339 (5%)
Strand=Plus/Plus
Query 242 GAAGAGGTCGATACAAGTTCTGGGCGTTTGCTGCGATTTTGCTT-TTGGCTTTTTGGTCG 300
||| ||| || |||||||| ||||| || ||||||||| || || | ||||| |||||
Sbjct 182 GAA-AGGCCGGTACAAGTTTTGGGCCTTAGCTGCGATTCTG-TTACTCGCTTTCTGGTCA 239
Query 301 ATGTTCACTGGCACCGTCACTCTCCGGTT-ATCTACCGGGAATC-TAAACCGGTT-ATCG 357
||| |||||||||| |||| ||||| ||| ||| |||| || | | |||| || | |
Sbjct 240 ATGCTCACTGGCACGGTCAATCTCC-GTTGGTCTGCCGGTAA-CATTAACCATTTCA-CC 296
Query 358 GAAGATCTAGGGATTCCGAACTATGAAAACCTTGACGTTCTGGAAATGGAGGAGAGGGAG 417
|| ||||| | |||| | | | || | || || ||||| ||||||||||||||||||
Sbjct 297 GACGATCTCGTCTTTCCCATCCACGAGGATCTCGATGTTCTTGAAATGGAGGAGAGGGAG 356
Query 418 AAAGTGGTGAAGCATATGTGGGATGTGTATA-CAAATAGTCGTCGGATCAAATTGCCTAG 476
|||||||||||||| |||||||||||||||| ||| | | ||||| |||| ||| |||||
Sbjct 357 AAAGTGGTGAAGCACATGTGGGATGTGTATAACAA-TGGCCGTCGTATCAGATTACCTAG 415
Query 477 ATTTTGGCAAGAGGCTTTTGTTGCTGCTTATGAAGAACTCACTAGTGATGTGCCTG--G- 533
|||||||||||||| || | |||||||| || || || || |||||||| |||| |
Sbjct 416 GTTTTGGCAAGAGGCCTTCGAGGCTGCTTACGAGGAGCTTACCAGTGATGTACCTGATGT 475
Query 534 GGTTAGAGAAGCTGCTATTGGTGAAATCGCCAAGATGTC 572
|||| ||| ||||| ||| || ||||| | ||||||
Sbjct 476 GGTT-GAG--GCTGCCATTTCCGAGATCGCTAGGATGTC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5