BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490973
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36640.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1688 0.0
> AT4G36640.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr4:17276936-17279201 REVERSE LENGTH=1304
Length=1304
Score = 1688 bits (914), Expect = 0.0
Identities = 1187/1310 (91%), Gaps = 53/1310 (4%)
Strand=Plus/Plus
Query 1 TTTTAAGTCCATTTGAAGTGGGAATGATACTCTCGTGACTACCAAACTTCATTGATCctc 60
|||||||||| ||||||||||||||||||||| |||||| |||||||| ||| || ||||
Sbjct 1 TTTTAAGTCCCTTTGAAGTGGGAATGATACTCGCGTGACGACCAAACTCCATCGAGCCTC 60
Query 61 tctctctctctctGTGATCAGTTTAATCTCTACTG-AAGAAAGAACGAAAGAAAGAAAGA 119
|||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 61 TCTCTCTCTCTCTGTGATCAGTTTAA--TCTACTGAAAGAAAGAAAGAAAGAAAGAAAGA 118
Query 120 TCCGTATTATTAGGCTTTGAAGCTGTCTCAAGATTGTTGTTTAATCAAACATGTTCAGAA 179
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 TCCGTATTATTAGGCTTCGAAGCTGTCTCAAGATTGTTGTTTAATTAAACATGTTCAGAA 178
Query 180 GAAGGAATGCTCACCAACTCG---AGGATGATTCTC-ACAAAGATAACAAGGTTAGAGAA 235
||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||
Sbjct 179 GAAGGAATGCTCACCAACTCGACAATGATGATTCTCAAC-AAGATAACAAGGTTAGAGAA 237
Query 236 TTGAAATCCGCCATAGGACCACTATCGGGACATCGTTTAGTTTTCTGCTCTGATGCTTCA 295
||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 238 TTGAAATCCGCGATAGGACCATTATCGGGACATAGTTTAGTTTTCTGCTCTGATGCTTCC 297
Query 296 TTGAGGAGATATT-TGGATGCTCGTAATTGGAATGTGGAAAAAGCCAAGAAAATGATTGA 354
|||||||||| || | ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 298 TTGAGGAGAT-TTCTAGATGCTCGTAATTGGGATGTGGAAAAAGCCAAGAAAATGATCCA 356
Query 355 AGAGACTCTTAAATGGAGATCAACCTATAAACCTCAAGAGATCCGTTGGAATCAAGTAGC 414
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 AGAGACTCTTAAATGGAGATCAACTTATAAACCTCAAGAGATCCGTTGGAATCAAGTAGC 416
Query 415 ACATGAAGGTGAGACTGGAAAAATTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGT 474
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 ACATGAAGGTGAGACCGGAAAAGCTTCAAGAGCTAGTTTTCATGATCGACAAGGTAGAGT 476
Query 475 AGTGCTTATAATGAGACCCGC-ATTGCAAAACTCAACTTCATCA-GAAGGTAATATCAAG 532
|||||||||||||||||| || || ||| |||||||| ||| || ||||||||||||| |
Sbjct 477 AGTGCTTATAATGAGACCAGCCAT-GCAGAACTCAACATCA-CAAGAAGGTAATATCAGG 534
Query 533 CATTTGGTCTATCTTCTTGAAAATGCAATCCTAAATCTTCCCAAGGGACAAGAACAAATG 592
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 535 CATTTGGTGTATCTTCTTGAAAATGCAATCATAAATCTTCCCAAGGGACAAAAACAAATG 594
Query 593 TCTTGGCTCATCGATTTCACTGGTTGGTCTATGGCTGCTAATGTTCCTATGAAAACAACA 652
||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 595 TCTTGGCTCATTGATTTCACTGGTTGGTCTATGGCTGTTAATCCTCCTATGAAAACAACA 654
Query 653 CGCGAAATCATCCACATTCTACAGAA-TCATTACCCTGAGAGACTCGGTATCGCCTTTCT 711
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 655 CGCGAAATCATTCACATTCTACAGAACT-ATTACCCTGAGAGACTCGGTATCGCCTTTCT 713
Query 712 CTATAATCCACCAAGAATCTTCCAAGCATTCTACAGGGCTGCTAAGTACTTCTTGGACCC 771
||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 CTACAATCCACCAAGACTCTTCCAAGCAGTCTACAGGGCTGCTAAGTACTTCTTGGACCC 773
Query 772 ATGTACAGCTGAAAAGGTGAAATTTGTGTACCCAAAAGACAAAGCAAGTGATGAATTGAT 831
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 ACGTACAGCTGAAAAGGTGAAATTTGTGTACCCAAAAGACAAAGCAAGTGATGAACTGAT 833
Query 832 GAC-ATCACACTTTGATATTGAGAATCTCCCCAAGGAATTTGGAGGAGAAGCAACACTAG 890
||| | |||| ||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 834 GACGA-CACATTTTGACGTTGAGAATCTCCCCAAGGAATTCGGAGGTGAAGCAACACTAG 892
Query 891 AGTATGATCATGAGGATTTCTCAAGACAAATGTGTGAAGACGATGTCAAAACCGCAAAAT 950
||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 893 AGTATGATCATGAAGATTTCTCACGACAAATGTATGAAGACGATCTCAAAACCGCAAAAT 952
Query 951 ACTGGGGATTGGAGGAGAAGCACTATCCGAAACCAAACGGTTTCTCTGCATCCGATGTTG 1010
|||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 953 ACTGGGGACTAGAGGGGAAGCACTATCCGAAAACAAACGGTTTCTCTCCATCCGATGTTG 1012
Query 1011 TTCCTGAGCCGGCAACTTCTATT-GCATCAGCCGCTAGCTGAGAGTTGAAT-ATATAATA 1068
||||||||||||| | | | | |||||||| ||||||||||||||||| ||||| ||
Sbjct 1013 TTCCTGAGCCGGCGA-TAGAAATCGCATCAGCAGCTAGCTGAGAGTTGAACGATATA-TA 1070
Query 1069 TACACAGAGAAACAAGAAGAGAAGAAGAATAAA-GGTTTATTCTCATTGATAGAAGAAGG 1127
||||| ||| ||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1071 CACACA-AGAG-CAAGAAGAGAAGAAGAATAAAAGGGTTATTCTCATTCATAGAAGAAA- 1127
Query 1128 AGCCATTAGAATGTGCTGGTTAACTTGA-G-TC--T----T---A----G-C----C-TC 1166
||||| |||||||||||||||||||||| | || | | | | | | ||
Sbjct 1128 AGCCAATAGAATGTGCTGGTTAACTTGATGATCAATAAAGTTTCAAATAGTCTTTGCCTC 1187
Query 1167 TTTTTCTTATTAGTGAGCCAAAGACTTT-TGAATGTTTT-AATTAGAAGAG-CT-TA-TG 1221
|||||||||||||||||||||| ||||| | || ||||| |||||| |||| || | ||
Sbjct 1188 TTTTTCTTATTAGTGAGCCAAACACTTTGT-AACGTTTTTAATTAGCAGAGACTATCCTG 1246
Query 1222 TATGTGTGAGAGAATATTGTTACCATGTGTAATACTACTAGTTTTGTGTT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TATGTGTGAGAGAATATTGTTACCATGTGTAATACTACTAGTTTTGTGTT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5