BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490976
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36620.1 | Symbols: GATA19 | GATA transcription factor 19 | ... 1038 0.0
> AT4G36620.1 | Symbols: GATA19 | GATA transcription factor 19
| chr4:17268906-17269743 REVERSE LENGTH=717
Length=717
Score = 1038 bits (562), Expect = 0.0
Identities = 683/738 (93%), Gaps = 22/738 (3%)
Strand=Plus/Plus
Query 1 ACACAACACACACTTCTCTTTGTCCctctctctctctatatatatataGATATCAACTTT 60
|||||||||||||||||| || || | || ||||||||||||| | || |||||||||||
Sbjct 1 ACACAACACACACTTCTC-TT-TCTC-CT-TCTCTCTATATAT-TTTA-ATATCAACTTT 54
Query 61 CTAGGGTTTCCAAGATCATATATCTACGTATAGTGATGGGTTTCTCAATGTTCTTCTCCG 120
|||||||||||||| | | | || |||||||||||||||||||||||||||||||
Sbjct 55 CTAGGGTTTCCAAG-T--T-CA--TA--TATAGTGATGGGTTTCTCAATGTTCTTCTCCC 106
Query 121 CCGAAAACGACGTC-GTCCATCACTCCTCCCCTTATGCTTCTGTTGACTGCACTCTCTCA 179
|||||||||||||| | |||||| ||||| || |||||||||||||||||||||||||||
Sbjct 107 CCGAAAACGACGTCAG-CCATCATTCCTCTCCATATGCTTCTGTTGACTGCACTCTCTCA 165
Query 180 CTTGGAACTCCCTCCACTCGCCTCTGCAACGACGATGATGAACGTAGATTCTCTTCTCAT 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 166 CTTGGAACTCCCTCCACTCGCCTCTGCAACGAGGATGATGAACGTAGATTCTCGTCTCAT 225
Query 240 ACCTCCGACGCCTTAGGTTGGGACTTCTTGAACGGTTCCAAGAAAGGCGGTGGAGGTGGC 299
||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 226 ACCTCCGACACCATAGGCTGGGACTTCTTGAACGGTTCCAAGAAAGGCGGTGGAGGCGGC 285
Query 300 GGACATAACCTCCTCGCTCGCCGTTGCGCCAACTGCGACACCACTTCTACTCCTCTTTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GGACATAACCTCCTCGCTCGCCGTTGCGCCAACTGCGACACCACTTCTACTCCTCTTTGG 345
Query 360 AGAAACGGTCCAAGAGGTCCCAAGTCATTGTGTAATGCGTGTGGAATCCGATTCAAGAAA 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 346 AGAAACGGTCCAAGAGGTCCCAAGTCGTTGTGTAATGCGTGTGGAATCCGATTCAAGAAA 405
Query 420 GAAGAGAGACGTGCATCGACCGCCGGAAACTCTACCTCCGGCGGAGGATCAACGGCGGCT 479
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||
Sbjct 406 GAAGAGAGACGTGCATCGACCGCCAGAAACTCGACCTCCGGCGGAGGATCAACTGCAGCT 465
Query 480 AGAGTTCCAACTTTTGATCATCAAGCAGGAGCAAATTATTATTATAACAATAATAACCAA 539
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 466 GGAGTTCCAACTTTGGATCATCAAGCAAGTGCAAATTATTATTATAACAATAATAACCAA 525
Query 540 TATGCTTCATCGTCGCCCTGGGTTCAACACCATCAGCATAATACGCAGAGAATTCCATAT 599
||||||||||||||||| ||| || | | |||||||||||||||||||| ||||||||
Sbjct 526 TATGCTTCATCGTCGCCTTGG---CA-C-C-ATCAGCATAATACGCAGAGAGTTCCATAT 579
Query 600 TACTCGCCGGCGACTAACGAATACTCATGCGTTGATGACGTCAGAGATGTTGATCATGAC 659
||||||||||| | |||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 580 TACTCGCCGGCCAATAACGAATACTCATACGTTGATGATGTCAGAGTTGTTGATCATGAC 639
Query 660 GTCACGACCGACCCGTTCTTGTCTTGGAGGCTTAACCTCGCGGACCGGACCAGCCTTGTC 719
||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 640 GTCACAACCGACCCGTTCTTGTCTTGGAGGCTTAACGTCGCCGACCGGACCGGCCTTGTC 699
Query 720 CACGATTTTACGATGTGA 737
||||||||||||||||||
Sbjct 700 CACGATTTTACGATGTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35766712664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5