BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490980
Length=168
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36560.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 252 8e-67
> AT4G36560.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:17252657-17252989 FORWARD LENGTH=333
Length=333
Score = 252 bits (136), Expect = 8e-67
Identities = 158/168 (94%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 1 ACAATAAAACATAGCGAGTGGAGAGGAATCAGAGAAGTTAAAC----AATGTCCAAAACA 56
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 166 ACAATAAAACATAGCGAGTGGAGAGGGATCAGAGTAGTTAAACAATTAATGTCCAAAACA 225
Query 57 AAGGAGCAGAAGAAGCGTAAGAAAGGCGCAGATGTCGTCGATAAGATTCATCGACGAGAT 116
||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 226 AAGGAGCAGAAGAAGCGTAGGAAAGGCGCAGATGTCGTCGATAAAATTCATCTACGAGAT 285
Query 117 CTTCCCAAGATTTGGAATCTGTCCACTTGTATTGCCACTCAATGTTAA 164
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 286 CTTCCCAAGATTTGGAATTTGTCCACTTGTATTGCCACTCAATGTTAA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7293695895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5