BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490984
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36530.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2167 0.0
> AT4G36530.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:17239958-17241937 REVERSE LENGTH=1466
Length=1466
Score = 2167 bits (1173), Expect = 0.0
Identities = 1332/1407 (95%), Gaps = 18/1407 (1%)
Strand=Plus/Plus
Query 1 GTCGAGCGGATTCGACTTGTCTGGCTCAGGCGTCGCCACAACTCTCCCGCAAGTTCACAC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GTCGAGCGGATTCGACTTGTCTGGCTCAGGGGTCGCCACAACTCTCCCGCAAGTTCACAC 60
Query 61 ACT-CACTCGGTGCTCAGAAAAGTTTGTTCTTTTTGCATCTGTTAGCTCTGAAATATCTG 119
| | ||||||||||||| |||||||||| |||||||||||| | || |||||||||||||
Sbjct 61 A-TACACTCGGTGCTCA-AAAAGTTTGTCCTTTTTGCATCTCTCAGTTCTGAAATATCTG 118
Query 120 GTTCTCTTTTCCTTTCCTTGGAGATTTTACGAGGTTGTTCTCTGTAAATAATCGATGTCT 179
|||||| | | |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 119 GTTCTC---T--TGTCCTTGAAAATTTTACGAGGTTGTTCTCTGTGAATAATCGATGTCT 173
Query 180 GCTTCATGTGCTCTAACACCGTCTGTTAGGACAGAGTTATTCAG-T--TCATCATCTAAA 236
|||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 174 GCTTCATGTGCTTTAACACCGTCTGTTAGGACAGAGTTATTCAGTTCATCATCATCTAAA 233
Query 237 AGATCAATCTTTCCTGCTCA-AATTTGTCGACCCAGAAACAAATGTGAGATCAGCAGAAG 295
|||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||
Sbjct 234 AGATCAATCTTTCCTGCT-AGAATTTGTCGACCAAGAAACAAATGTGAAATCAGCAGAA- 291
Query 296 GGGA-TTTGCAATCAGAGGAGGGATTGTTGCTTCTGGAGTTTCAGTCATGGGCACTTCTT 354
|||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 292 GGGATTTTGCAATTAGGGGAGGGATTGTTGCTTCTGGAGTTTCAGTCATGGATACTTCTT 351
Query 355 CTG---CTTCTCAGTCTGTCCAAGGTAGTGAGAGGTTGGCTTTTAAACCACAAGGGTATA 411
||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 352 CTGCTTCTTCTCAGTCTGTTCAAGGTAGTGAGAGGTTGGCTTTTAAACCAGAAGGCTATA 411
Query 412 ACTTTTGGGAATGGAGAGGTCACAAGATTCATTATGTAGTTCAAGGAGAAGGCTTACCTC 471
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 412 ACTTTTGGGAATGGAGAGGTCACAAGATTCATTATGTTGTTCAAGGAGAAGGCTCGCCTC 471
Query 472 TTGTTCTTATTCATGGCTTTGGTGCTTCTGTCTTTCATTGGAGGTATAACATTCCTGAAC 531
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TAGTTCTTATTCATGGTTTTGGTGCTTCTGTCTTTCATTGGAGGTATAACATTCCTGAAT 531
Query 532 TGGCTAAGAAATACAAGGTTTACGCCTTGGACTTGCTCGGTTTCGGATGGAGTGACAAAG 591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 532 TGGCTAAGAAATACAAGGTTTACGCCTTGGACTTACTCGGTTTCGGATGGAGTGACAAAG 591
Query 592 CTCTCATAGAGTATGATGCCATGGTTTGGACAGATCAAGTTATTGATTTCATGAAAGAGA 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTCTCATAGAGTATGATGCCATGGTTTGGACAGATCAAGTTATTGATTTCATGAAAGAGG 651
Query 652 TAGTGAAAGAACCAGCTGTTGTGGTCGGGAACAGCCTCGGGGGATTCACAGCATTGTCAG 711
|||||||||||||||||||||| || || |||||||| |||||||| || ||||||||||
Sbjct 652 TAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGCCTTGGGGGATTTACGGCATTGTCAG 711
Query 712 TTGCGGTTGGATTACCCGAGCAGGTCACGGGAGTTGCTCTTCTAAACTCTGCAGGACAAT 771
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 712 TTGCGGTTGGATTACCCGAGCAAGTCACGGGAGTTGCACTTCTGAACTCTGCGGGACAAT 771
Query 772 TTGCAGCCGAGAGTAGAAAACGAGAGGAAGCTGATGAAACCGTGATAACCAAGTTTATAG 831
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 TTGCAGCCGAGAGTAGAAAACGAGAGGAAGCTGATGAAACTGTGATAACCAAGTTTATAG 831
Query 832 TTAAGCCACTTAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCA 891
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTAAGCCGCTAAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCA 891
Query 892 AGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTGTGTACATAGACTCTACTAATGTCG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTGTGTACATAGACTCTACTAATGTCG 951
Query 952 ATGACTACCTCGTCGAATCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATGACTACCTCGTCGAATCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTAT 1011
Query 1012 ACTACAGACTGATGACAAGGTTCTTAACAAACCAGAGCAGATACACTCTAGATAGTGTTT 1071
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 ACTACAGATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTC 1071
Query 1072 TAAGTAAGATGACTTGTCCGCTTCTGTTGCTTTGGGGAGACCTTGACCCGTGGGTCGGTC 1131
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 1072 TAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGATCCGTGGGTCGGTC 1131
Query 1132 CAGCTAAAGCTGAGAAAATCAAAGCATTTTACTCGAACTCATTGCTCGTGCACTTACAAG 1191
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1132 CAGCTAAAGCCGAGAAAATCAAAGCATTTTACTCGAACTCATCGCTCGTTCACTTACAAG 1191
Query 1192 CAGGGCATTGTCCTCATGATGAAGTCCCAGAAGCTGTAAACAAGGCTCTGTTGGATTGGT 1251
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1192 CAGGGCATTGTCCTCATGATGAAGTCCCGGAAGCTGTAAACAAGGCTTTGTTGGATTGGT 1251
Query 1252 TGTCCATTAATGTAGCTTCAAAGCCAGCTTCTCCTATAGCCTTGGAGACGTAAAGACTCT 1311
||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1252 TGTCCATTAATATTGCTTCAAAGCCAGCTTCTCCTATAGTCTTGGAGACGTAAAAACTCT 1311
Query 1312 TTTTGTGAAGGAAGTATAGAGTTGTAAATACATTGTTACCTTTTACAATTGCTGCTTCTG 1371
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTTTGTGAAGGAAGTATATAGTTGTAAATACATTGTTACCTTTTACAATTGCTGCTTCTG 1371
Query 1372 AGCTTGTGTTATCTGAGATTTAGCAGA 1398
||||||||||||||||||||||||||
Sbjct 1372 TGCTTGTGTTATCTGAGATTTAGCAGA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5