BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490986
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 889 0.0
> AT4G36500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G18210.1);
Has 50 Blast hits to 50 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17225912-17226610
REVERSE LENGTH=699
Length=699
Score = 889 bits (481), Expect = 0.0
Identities = 639/708 (90%), Gaps = 40/708 (6%)
Strand=Plus/Plus
Query 1 ACATTGATCAAA--CTCTCTCATTACAACGAACAACAACAACAATCATCTCTTCACTTCT 58
|||||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 1 ACATTGATCAAACTCTCTCTCATTCCAAC--A-AACAACAACAATCATCTCTTTACTTCT 57
Query 59 CTATTCACATCATC-TTCTTGAA----TT-T-T----A----AAAGATGCAAATGCTAAG 103
|| ||||||||||| |||||||| || | | | ||||||||||||||||||
Sbjct 58 CTCTTCACATCATCTTTCTTGAATTCTTTATATACACAGTTTAAAGATGCAAATGCTAAG 117
Query 104 AAGCTTGAGCACGAGGACAAGAAGCCGTCGTGGAGGCTACGAGAGAGTGAGTGATGATTC 163
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 AAGCTTGAGCACGAGGACAAGAAGCCGTCGTGGAGGATACGAGAGAGTGAGTGATGATTC 177
Query 164 AAGTTTTAGTTTTCTCGGAGCAAAGCTAAGAAGATCGACGAGTGTTCCTTACTACGCTCC 223
|| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 178 AACTTTCAGTTTACTCGGAGCAAAGCTAAGGAGATCGACGAGTGTTCCTTACTACGCACC 237
Query 224 ATCTATAAAGCTTGGTGCTGGTGGCGTTCCGACCATCCTTGAGGAGCTTCCTCGTCAGAA 283
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 238 ATCTATAAAGCTTGGAGCTGGTGGTGTTCCGACCATTCTTGAGGAGCTTCCTCGTCAGAA 297
Query 284 ATCCAAGAAAGTTAAACCAACAGGCAAATTTAGCCACCCGATCTTTAGTCTTTTCTACGG 343
||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 298 ATCAAAGAAAGTCAAACCAACAGGCAAATTTAGTCACCCAATCTTTAGTCTTTTCTACGG 357
Query 344 AAAGAAGAAGAAGTCAACCACGACTAAGCCTGAGTTTTCTAGGTATCTTGAGTATTTGAA 403
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 358 AAAGAAGAAGAAGTCGACGACGACGAAGCCTGAGTTTTCTAGGTATCTTGAGTATTT-AA 416
Query 404 AG-AAGGTGGTATGTGGGATGCCAGAGCTAATGCCCCTGTTATCTATTACAAGTAGATCG 462
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 AGGAAGGTGGTATGTGGGATGCCAGAGCTAATGCGCCTGTTATCTATTACAAGTAGATCG 476
Query 463 ATATA--AATTTGTTAAAA-AAG-A-TCAAGAAagagagagagagagGGTGAAAGTTTTC 517
||||| |||||||||||| || | ||||||||||||||| | || |||||||||||
Sbjct 477 ATATATGAATTTGTTAAAACAAATAATCAAGAAAGAGAGAGGGTGA---TGAAAGTTTTC 533
Query 518 TTTTATTTGTTTGGTTCAAATCTTCTTCAATTTGTGATGATATTTGtatatatatatata 577
|||||||||||| ||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 534 TTTTATTTGTTTAGTTCAAATCTTCTTCAATTTGTGATGATATTA-T-T-TGTATATATA 590
Query 578 tTTCAATGATCCAATATTGTT-T-T---ATAAGCAT-TTACAAGTATTGGAAACGAAATT 631
|||||| |||||||||||||| | | |||||||| ||||||||||||||||| |||||
Sbjct 591 TTTCAACGATCCAATATTGTTATGTTTTATAAGCATATTACAAGTATTGGAAACAAAATT 650
Query 632 GTATGCTTTTGAGCACATTTTTGATTGGAAATGATTTTGAGTTTCAAA 679
||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 651 GTATGCTTTTGAGCACATTTT-GATTGGAAATGATTTTGAGTTTGAAA 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5