BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490987
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36470.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1775 0.0
> AT4G36470.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:17215027-17216530
REVERSE LENGTH=1272
Length=1272
Score = 1775 bits (961), Expect = 0.0
Identities = 1081/1140 (95%), Gaps = 3/1140 (0%)
Strand=Plus/Plus
Query 24 TTCACTTTTATTGTTATTGAGATGGATAAGAAGGATCTGGAGAGAGAGTTTCACATGACA 83
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 35 TTCACTTTTATTGTTATTGTGATGGATAAGAAGGATATGGAGAGAGAGTTTTACATGACA 94
Query 84 GGAGGAGATGGCAAAACTAGTTATGCCAGAAACTCTTCCCTCCAGAAGAAAGCTTCTGAT 143
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 95 GGAGGAGATGGAAAAACTAGTTATGCCAGAAACTCTTCCCTCCAGAAGAAAGCATCTGAT 154
Query 144 GTGGCAAAGCACATAACACTAGAGACACTTCAACAACTCTACAAAGAGACAAGACCCAAG 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 155 ACGGCAAAGCACATAACACTAGAGACACTTCAACAACTCTACAAAGAGACAAGACCAAAG 214
Query 204 AGCTTAGGAATAGCTGATCTAGGTTGTTCTTCAGGACCAAACACACTCTCCACCATTAAA 263
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 215 AGTTTAGGAATAGCTGATCTAGGATGTTCTTCAGGACCAAACACTCTCTCCACCATTACA 274
Query 264 GACTTCATCAAAACCGTCCAAGTTGCTCACCACCGCGAGATCCCAAACCAGCCCTTGCCA 323
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 275 GACTTCATCAAAACCGTCCAAGTTGCTCACCACCGCGAGATCCCAATCCAGCCCTTACCA 334
Query 324 GAATTCAGCATCTTCCTTAACGATCTCCCTGGAAATGACTTCAACTCCATATTCAAGTCA 383
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 335 GAATTCAGCATCTTCCTTAACGATCTCCCTGGAAATGATTTCAACTTCATATTCAAGTCA 394
Query 384 TTACCAGACTTCCACATAGAGCTCAAGAGAGACAACAACAATGGTGATTCCCCCTCAGTT 443
||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 395 TTACCAGACTTTCACATAGAGCTCAAGAGAGACAACAACAATGGTGATTGCCCTTCAGTT 454
Query 444 TTCATTGCAGCTTACCCTGGATCATTCTATGGAAGACTCTTCCCTGAAAAAACCATCCAC 503
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 455 TTCATTGCAGCTTACCCTGGGTCATTTTATGGAAGACTCTTCCCTGAAAACACCATCCAC 514
Query 504 TTTGTCTATGCCTCTTATAGCTTACACTGGCTTTCCAAGGTTCCTGCAGCTTTATATGAC 563
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 515 TTTGTCTATGCCTCTCATAGCTTACACTGGCTTTCCAAGGTTCCTACAGCTTTATATGAC 574
Query 564 GAGCAAGGCAAGTCCATAAACAAAGGTTGTGTTAGTATTTGCTCCTCGAGCTCTGAAGCT 623
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 575 GAGCAAGGCAAGTCCATAAACAAAGGTTGTGTTAGTATCTGCTCCTTAAGCTCTGAAGCT 634
Query 624 GTTTCCGAAGCTTACTACAGTCAGTTCAAGGAAGATTTCTCTATTTTCCTCCGGTGTAGA 683
|||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 635 GTTTCCAAAGCTTACTGCAGTCAATTCAAGGAAGATTTCTCCATTTTCCTCCGGTGTAGA 694
Query 684 TCAAAAGAGATGGTTGCTGCAGGAAGAATGGTGCTCATAATACTCGGAAGAGAAGGTCCT 743
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 695 TCAAAAGAGATGGTTTCTGCAGGAAGAATGGTGCTTATTATACTCGGAAGAGAAGGTCCT 754
Query 744 GATCATGTCGATAGAGGAAACTCTTTCTTCTGGGAACTTCTCTCAAGATCCATAGCAGAT 803
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 755 GATCATGTCGATAGAGGAAACTCTTTCTTTTGGGAACTTCTCTCAAGATCCATAGCAGAT 814
Query 804 CTTGTTGCACAGGGAGAGACTGAGGAAGAGAAGCTTGATTCTTACGATATGCATTTTTAC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 815 CTTGTTGCACAGGGAGAGACTGAGGAAGAGAAGCTTGATTCTTACGATATGCACTTCTAC 874
Query 864 GCCCCGAGTGCTGATGAGATAGAAGGTGAAGTGAACAAAGAAGGGTCTTTTGAATTAGAG 923
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 875 GCTCCGAGTGCTGATGAGATAGAAGGTGAAGTGGACAAAGAAGGGTCTTTTGAATTAGAG 934
Query 924 AGGTTAGAGATGTTAGAAGTGGAGAAAGATAAAGAGAA--C-GTGAACGATACCAGTTAT 980
||||||||||||||||||||| |||| || |||| ||| | | | |||| ||||||
Sbjct 935 AGGTTAGAGATGTTAGAAGTGAAGAAGGACAAAGGGAATACCGAGGGTGATATAAGTTAT 994
Query 981 GGTAAGGCGGTTGCGAAGACCGTAAGAGCAGTTCAAGAATCAATGCTTGTTCAATACTTT 1040
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 995 GGTAAGGCGGTTGCAAAGACGGTAAGAGCAGTTCAAGAATCAATGCTTGTTCAACACTTT 1054
Query 1041 GGGGAAAAGATTCTTGACAAGCTGTTTGATACATATGGTAGAATGGTTGACGAAGAGTTA 1100
||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1055 GGGGAAAAGATTCTTGACAAGCTCTTTGATACATATTGTAGAATGGTTGACGATGAGTTA 1114
Query 1101 GCTAAGGAAGACATAAGACCCATCACATTTGTTCTTGTCCTAAGAAAGAAGCTCTGAAAC 1160
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1115 GCTAAGGAAGACATAAGACCCATCACATTTGTTGTTGTCCTAAGAAAGAAGCTCTGAAAC 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5