BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490994
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36420.1 | Symbols: | Ribosomal protein L12 family protein ... 1299 0.0
> AT4G36420.1 | Symbols: | Ribosomal protein L12 family protein
| chr4:17203031-17204312 REVERSE LENGTH=874
Length=874
Score = 1299 bits (703), Expect = 0.0
Identities = 820/876 (94%), Gaps = 10/876 (1%)
Strand=Plus/Plus
Query 1 CTGACATGAATTCTCAACGAAGCTAACATCAATTCGATAGAGAGTG-AAACTATGAGGAA 59
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 4 CTGACATGAATTCTCAACGAAGCTAAGATCAATTCGATAGAGAGTGAAAACTATGAGGAA 63
Query 60 TCTGCGAATCATCTCCTCTCATTTCTCACGAGTTTTCAAATCCATCGAGACACACCCAAG 119
||||||||||||||||||||| |||||||||||||| ||||||| |||||||| | ||||
Sbjct 64 TCTGCGAATCATCTCCTCTCACTTCTCACGAGTTTTGAAATCCACCGAGACACGCTCAAG 123
Query 120 TTCTAATCATTTGTTCTCGATCCAATCTCGGAGCTACTCGTCGCCGGCGACGCAATCGGA 179
||| ||| || ||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 124 TTCCGTTCAATTATTCACGATCCAATCTCGGAGCTACTCATCTCCGGCGACGCAATCGGA 183
Query 180 GAACGTCTCCAAAATCGTAAATGAGCTCTCGAATCTCACTCTCTTGGAAACAATGGATCT 239
|||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 184 GAACGTGTCCAAAATCGTCAATGAGCTATCGAATCTCACTCTTTTGGAAACAATGGATCT 243
Query 240 TACTGAGATCCTTAGACAGAAGCTAGATATCAGTGAGTTGCCTGTGATGGCGGCGATGAT 299
||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 244 TACTGAGATCCTTAGGCAGAAGCTAAACATCAGTGAATTGCCTGTGATGGCGGCGATGAT 303
Query 300 GCCAGGGATGTCATTCCCGGGATCTGGAGCCGGAAAATCCGCCGGCGGagaagggaaaga 359
||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 304 GCCAGGGATGTCATTACCGGGATCTGGAGCTAGTAAATCCGCCGGCGGAGAAGGGAAAGA 363
Query 360 gaagaagaaagaagcaaagaCTGCGTTTGATGTGATGCTTCAAGCTTATGAAGCAGTGTC 419
||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 364 GAAGAAGAAGGAAGCAAAGACTGCGTTTGATGTGATGCTTCAAGCGTACGATGCAGTGTC 423
Query 420 GAAGATCAAGGTGATTAAAGAAGTGAGAACGATTACGG-ATTTGGGGTTGAAGGAAGCTA 478
|||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 424 GAAGATAAAGGTGATTAAAGAAGTGAGAACGATTACGGCA-TTGGGGTTGAAGGAAGCGA 482
Query 479 AGGATTTGGTGGAGAAAGCTCCAACCTTGTTGAAGAAAGGAGTTAGTAAGGAAGAAGCAG 538
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 483 AAGATTTGGTGGAGAAAGCTCCAACATTGTTGAAGAAAGGAGTTAGTAAGGAAGAAGCAG 542
Query 539 AGAAGATAATTGAGAAATTGAAGGCTGTTGGAGCTAAAGTTGCTATGGAGTGACCATTGT 598
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 543 AGAAGATCATTGAGAAGTTGAAGGCTGTTGGAGCTAAAGTTGCTATGGAGTGACCATTTT 602
Query 599 TAGGTGTTACTAAAATGGAGCATGAGCAGGAACAAATGAAGCTTCTGCTGAGTAGTCCTT 658
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 603 TAGGTGTTATTAAAATGGAGCATGAGCAAGAACAAATGAAGCTTCTGCTGAGTAGTCCTT 662
Query 659 CGTATTGTTTATTACAATTGTAAGATGTCATGGAAAGTCATCAGCAGCTCTTTTCTTTAG 718
| || |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 663 CCTAGTGTTTATTACAAATGTAAGATGTGATGGAAAGTCATCAGCAGCTCTTTTCTTTAG 722
Query 719 AGGTAGAAACAGATTTTTGTCTTCAATCAAATATACACGAAGGCTTGTTAGAAGCAACA- 777
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 723 AGATAGAAACAGATTTTTGTCTTCTATCAAATATACACGAAGGCTTGTTAGAAGCAA-AG 781
Query 778 TTCTCT-T-CTTTGGATCAATCATTCTCTCAGTTCGTGGTTTGTACTAACAGTTGTTGAT 835
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 782 TTCTCTCTTCTTTGGATCAATCATTCTCTCAGTTCTTGGTTTGTACTAACAGTTG---AT 838
Query 836 GATTTCTTTCATATAATAATGAATCATGTTATTTCC 871
||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTTCTTTCATATAATAATGAATCATGTTATTTCC 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5