BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490995
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36410.1 | Symbols: UBC17 | ubiquitin-conjugating enzyme 17 ... 990 0.0
> AT4G36410.1 | Symbols: UBC17 | ubiquitin-conjugating enzyme 17
| chr4:17201922-17202988 FORWARD LENGTH=631
Length=631
Score = 990 bits (536), Expect = 0.0
Identities = 576/595 (97%), Gaps = 3/595 (1%)
Strand=Plus/Plus
Query 3 TAAGCAAAAATGACGAGTTCTTCTGAATCAACTCGCAAGGGTCTGACCAAAATCGCCACG 62
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 TAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGGGTCTGACCAAAATCGCCACG 98
Query 63 AACCGGTTGCAGAAAGAGTTTATGGAGTGGCAAACCAATCCTCCTGCTGGTTTCAAGCAC 122
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 99 AACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCAC 158
Query 123 AGAGTCTCTGATGATCTCCAACGATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTT 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 AGAGTCTCTGATAATCTCCAACGATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTT 218
Query 183 TATGCCAATGAAACTTACCAACTTCAGGTTGAGTTCCCTGAGCATTATCCTATGGAAGCT 242
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 219 TACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCT 278
Query 243 CCACAGGTCATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCAC 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CCACAGGTTATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCAC 338
Query 303 ATTTGTTTGGATGTTTTGTATGACTCGTGGTCACCGGCTATGAGACTAAGTTCGATCTGT 362
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 339 ATTTGTTTAGATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGT 398
Query 363 CTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGCAAAAGCCGAAAGACAATGAC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGCAAAAGCCGAAAGACAATGAC 458
Query 423 CATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCAT 518
Query 483 GACGATAAAGTATAACATCTCCTATAATATTGTGATTAGAAACAAATTGTATGATGATCT 542
|||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||
Sbjct 519 GACGATAAAGTATAACATCTCCTATAATATTGTGATTACAAACGAATTGTA--A-GATCT 575
Query 543 CAGGTCGAGTTCTTGATCTGTTGCTATCTTTAACACAAGAACAGCTTCTTTCTAC 597
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 576 CAGGTCGAGTTCTTGATCTGTTGCTATCTTTAAAACAAGAACAGCTTCTTTCTAC 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5