BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490996
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36400.1 | Symbols: | FAD-linked oxidases family protein | ... 2885 0.0
> AT4G36400.1 | Symbols: | FAD-linked oxidases family protein
| chr4:17197212-17200907 FORWARD LENGTH=1992
Length=1992
Score = 2885 bits (1562), Expect = 0.0
Identities = 1650/1694 (97%), Gaps = 0/1694 (0%)
Strand=Plus/Plus
Query 2 AGAAGAAGAAGAATGATGATGCAGAAATTGAGAAGATCGGGAGCGTTCATAAGATTTGGA 61
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 42 AGAAGTAGAAGAATGATGATGCAGAAATTGAGAAGATCGGGGGAGTTCATAAGATTTGGA 101
Query 62 TGCAAATCTCTAATTACTAGCCGACCAGACAAGAACTCAGTGTCACGTTCTGTGTCAGGC 121
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 102 TGCAAATCTCTAATTAGTAGCCGACCAAACAAGGACTCAGTGTCACGTTCTGTGTCAGGC 161
Query 122 TTTGTGAATCACTACAAATCAAAAGGCAAGCTTTTTGAGCTAAGTGATGGGAACTATAAC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTTGTGAATCACTACAAATCAAAAGGCAAGCTTTTTGAGCTAAGTGATGGGAACTATAAG 221
Query 182 ACAGAGCTTCATCATCCATGTATTAGTAGACATTTGGGGATGCTTCTTCAGCAGTATAAG 241
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 222 ACAGAGCTTCATCATCCATGTATTAGTAGAAATGTGGGGATGCTTCTTCAGCAGTATAAG 281
Query 242 TGTTTTGGATCATCAGCAGCTTCTAAAATTCAGAGAAACCCTTTGTTTTCGTCGTTGGAT 301
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 282 TGTTTTGGATCATCAGCAGCTTCTTTAATTCAGAGAAACCCTTTGTTTTCGTCGTTGGAT 341
Query 302 TCGAAAGATGTTAGCTACTTTAAGGAGATATTAGGTGaaaaaaaCGTGATTGAAGATAAA 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 342 TCGAAAGATGTTAGCTACTTTAAGGAGATATTAGGTGAAAAAAACGTGGTTGAAGATAAA 401
Query 362 GAAAGGCTCGAGACTGCAAATACAGATTGGATGCATAAGTACAAAGGATCTAGTAAGCTG 421
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAAAGGCTTGAGACTGCTAATACAGATTGGATGCATAAGTACAAAGGATCTAGTAAGCTG 461
Query 422 ATGCTCTTGCCCAAGAATACACAAGAGGTGTCTCAGATACTTCAGTATTGTGATTCGAGG 481
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 462 ATGCTCTTGCCCAAGAATACACAAGAGGTGTCTCAGATACTTGAGTACTGTGATTCGAGG 521
Query 482 CGTTTAGCTGTTGTTCCTCAAGGAGGAAACACTGGTCTTGTTGGTGGAAGTGTGCCTGTC 541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CGTTTAGCAGTTGTTCCTCAAGGAGGAAACACTGGTCTTGTTGGTGGAAGTGTGCCTGTC 581
Query 542 TTTGATGAGGTGATCATCAATGTTGGTCTCATGAATAAAGTCTTAGCTTTTGATGAGGTT 601
||||||||||||||| ||||||||||||| ||||| ||| ||||| ||||||||||||||
Sbjct 582 TTTGATGAGGTGATCGTCAATGTTGGTCTGATGAACAAAATCTTATCTTTTGATGAGGTT 641
Query 602 AGTGGCGTCTTGGTCTGTGAAGCAGGATGCATATTAGAAAATCTGGCAACTTTCCTTGAC 661
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AGTGGCGTCTTGGTGTGTGAAGCAGGATGCATATTAGAAAATCTGGCAACTTTCCTTGAC 701
Query 662 ACAAAAGGTTTTATTATGCCTCTAGACTTAGGTGCAAAAGGAAGCTGTCATATCGGTGGA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACAAAAGGTTTTATTATGCCTCTAGACTTAGGTGCAAAAGGAAGCTGTCATATCGGTGGA 761
Query 722 AATGTTTCAACCAATGCTGGTGGTTTGCGTCTAATCCGATATGGCTCACTTCATGGAACC 781
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 762 AATGTTTCAACTAATGCTGGTGGTTTGCGTCTAATCCGTTATGGCTCACTTCATGGAACT 821
Query 782 GTATTGGGTCTAGAAGCTGTCACAGCAAATGGCAACGTGCTTGACATGCTTGGAACTTTA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GTATTGGGTCTAGAAGCTGTCACAGCAAATGGCAACGTGCTTGACATGCTTGGAACTTTA 881
Query 842 CGCAAAGACAATACTGGGTACGACTTAAAACATTTGTTTATTGGTAGTGAAGGATCACTT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CGCAAAGACAATACTGGGTACGACTTAAAACATTTGTTTATTGGTAGTGAAGGATCACTT 941
Query 902 GGTATTGTAACTAAAGTTTCTATTCTCACACAACCAAAATTGTCTTCTGTAAATTTAGCC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGTATTGTAACTAAAGTTTCTATTCTCACACAACCAAAATTGTCTTCTGTAAATTTAGCC 1001
Query 962 TTCATTGCCTGCAAAGATTATCTCAGCTGCCAGAAACTTCTTGTTGAAGCAAAGAGAAAT 1021
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TTCATTGCTTGCAAAGATTATCTCAGCTGCCAGAAACTTCTTGTTGAAGCAAAGAGAAAT 1061
Query 1022 CTTGGAGAGATACTATCCGCTTTCGAGTTTCTTGATAACAATTCCATGGATTTGGTACTG 1081
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTGGAGAGATACTCTCGGCTTTCGAGTTTCTTGATAACAATTCCATGGATTTGGTACTG 1121
Query 1082 AACCACCTAGACGGTGTACGTAATCCAGTTTCCTCTTCGGAGAACTTTTATATTCTGATA 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AACCACCTAGACGGTGTACGTAATCCAGTTTCCTCTTCGGAGAACTTTTATATTCTGATC 1181
Query 1142 GAGACAACAGGGAGTGATGAAACTAATGACAGGGAGAAGCTTGAAGCTTTCCTGTTAAAG 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1182 GAGACAACAGGGAGTGATGAAACTAATGACAGGGAGAAGCTTGAAGCTTTCCTGTTGAAG 1241
Query 1202 TCACTGGAAAAAGGTTTAGTTTCTGATGGTGTAATCGCTCAAGACATTAACCAGGCATCC 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCACTGGAAAAAGGTTTAGTTTCTGATGGTGTAATCGCTCAAGACATTAACCAGGCATCC 1301
Query 1262 TCATTTTGGCGCATACGAGAGGGTATAACAGAGGCGTTACAGAGAGCAGGAGCTGTTTAC 1321
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1302 TCATTTTGGCGCATACGAGAGGGTATAACAGAGGCGTTACAGAAAGCAGGAGCTGTTTAC 1361
Query 1322 AAGTATGACTTATCCTTACCGGTTGAAGAAATTTACAATATTGTTAACGATCTTCGAGGG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 AAGTATGACTTATCCTTACCGGTTGAAGAAATTTACAATATTGTTAACGATCTTCGAGGG 1421
Query 1382 AGATTAGGTGACTTAGCAAATGTTATGGGGTATGGTCACCTTGGAGACGGAAATCTACAT 1441
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1422 AGATTAGGTGACTTAGCAAATGTTATGGGATATGGTCACCTTGGAGACGGAAATCTACAT 1481
Query 1442 TTAAACATCTCAGCCGCAGAATATGATGATAAGCTGTTAGGTTTGATAGAACCTTATGTC 1501
||||||||||||||||| |||||| | |||||||| |||||||||||||| |||||||||
Sbjct 1482 TTAAACATCTCAGCCGCGGAATATAACGATAAGCTTTTAGGTTTGATAGAGCCTTATGTC 1541
Query 1502 TATGAGTGGACATCAAAGCACCGTGGAAGCATCAGTGCAGAACATGGATTAGGTGTGATG 1561
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1542 TATGAGTGGACATCAAAGCACCGTGGAAGCATCAGTGCGGAACATGGATTAGGTGTAATG 1601
Query 1562 AAAGCTAATGAAATCTTCTACAGCAAATCACCCGAAACCGTTGCATTAATGGCTTCCATT 1621
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1602 AAAGCTAATGAAATCTTCTACAGCAAATCACCCGAAACTGTTGCATTAATGGCTTCCATT 1661
Query 1622 AAAAAGTTGCTGGACCCAAAGGGGATTCTCAACCCTTACAAAGTTCTTCCTCACTCTCTC 1681
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAAAAGTTGCTGGACCCAAAGGGAATTCTCAACCCTTACAAAGTTCTTCCTCACTCTCTC 1721
Query 1682 TTCTCTTACTAAGG 1695
||||| |||||||
Sbjct 1722 TTCTCCAACTAAGG 1735
Score = 333 bits (180), Expect = 4e-90
Identities = 240/266 (90%), Gaps = 16/266 (6%)
Strand=Plus/Plus
Query 1711 TTCTTCAAAC-AA-GAATTTGGAACATGAGCAGCCAAGTTTGAGCGATATGATTGATGCA 1768
||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TTC-TCCAACTAAGGAATTTGGAACATGAGCAGCCAAGTTTGAGCGATATGATTGATGCA 1780
Query 1769 AAGGAACAAAAATACAAGTGCTGATGAAAAAGTCTTTAAACTCAAAAGTGTATATGCTTC 1828
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1781 AAGGAACAAAAATACAAGTGCTGATTAAAAAGTCTTTAAACTCAAAAGTGTATATGCTTC 1840
Query 1829 --TTCTTCTT-T--GTTGTTGTTGTTG------CCTTGTTTTTATATCTTATTACTAA-G 1876
|||||||| | ||||||||||||| ||||||||| ||||||| ||| ||| |
Sbjct 1841 GCTTCTTCTTCTTTGTTGTTGTTGTTGTTGTTACCTTGTTTTAATATCTTTTTAGTAAAG 1900
Query 1877 GA-AAGAAAGAATCGAAACCTATGGATCTTACGTGTATTTAAAGTCCAAATTTGCAGTGT 1935
|| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1901 GATAAGAAAGAATCTAAACCTATTGATCTTACGTGTATTTAAAGTTAAAATTTGCAGTGT 1960
Query 1936 ATTTAGACCAAAACTCGAAAAGATAA 1961
|| |||||||||||||||||||||||
Sbjct 1961 ATGTAGACCAAAACTCGAAAAGATAA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98443268745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5