BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490999
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36380.1 | Symbols: ROT3 | Cytochrome P450 superfamily prote... 3188 0.0
> AT4G36380.1 | Symbols: ROT3 | Cytochrome P450 superfamily protein
| chr4:17187528-17192317 REVERSE LENGTH=2135
Length=2135
Score = 3188 bits (1726), Expect = 0.0
Identities = 1981/2099 (94%), Gaps = 37/2099 (2%)
Strand=Plus/Plus
Query 1 AAAA-CCTTTTAAAATTCTCTATCGATCTCTTCACAAATTTTGCTATATCTACAATTCAT 59
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 7 AAAACCCTTTTAAAATTCTCTATCGATCTCATCACAAATTTTGCTATATCCACAATTCAT 66
Query 60 GTGCTTAGGCATATAGTTATTCCCAAGAAATCC-GTTTAACT-TCTTATGTATGCATCCT 117
|||||||||||||||||||||||||||||| || |||||||| | ||| ||||||| |||
Sbjct 67 GTGCTTAGGCATATAGTTATTCCCAAGAAA-CCGGTTTAACTGT-TTACGTATGCAACCT 124
Query 118 CCGGCAAGAATAGGACTTTTCATGTCGCCGGAAAATCTCCCTTGGCCTTCTGATTACATG 177
|||||||| |||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 125 CCGGCAAGCGCAGGACTTTTCCGGTCGCCGGAAAATCTCCCTTGGCCTTATAATTACATG 184
Query 178 GATTATTTGGTCGCTGGTTTCTTGATTTTGACGGCCGGAATACTTCTCCGTCCATGGCTC 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 185 GATTATTTGGTCGCTGGTTTCTTGGTTTTGACGGCCGGAATACTTCTCCGTCCATGGCTC 244
Query 238 TGGTTTCGTATaagaaattcgaaaacgaaagatggagatgaagaagaaga-ga--aggag 294
||||| ||| || |||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 245 TGGTTACGTCTACGAAACTCGAAAACGAAAGATGGAGATGAAGAAGAAGATAATGAGGAG 304
Query 295 aagaagaagggaaTGATTCCAAAGGGAAGCTTAGGCTGGCCGGTGATCGGAGAAACCCT- 353
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 305 AAGAAGAAGGGAATGATTCCAAACGGAAGCTTAGGCTGGCCGGTGATCGGAGAAACCCTA 364
Query 354 AACATTCATCGCTTGTGGTTATTCTTCTCGTCCTGTTACCTTCATGGACAAACGAAAGTC 413
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 AAC-TTCATCGCTTGTGGTTATTCTTCTCGGCCTGTTACCTTCATGGACAAACGAAAGTC 423
Query 414 TTTATAC-GGAAAGGTGTTCAAGACGAACATAATAGGGACACCAATCATAATATCAACCG 472
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 424 TTTATACGGGAAA-GTGTTCAAAACGAACATAATAGGGACACCAATCATAATATCAACCG 482
Query 473 ATGCAGAGGTTAATAAAGTGGTGCTCCAAAATCATGGGAACACATTTGTCCCTGCATACC 532
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 483 ATGCAGAGGTGAATAAAGTGGTGCTCCAAAACCATGGGAACACATTTGTCCCTGCATACC 542
Query 533 CTAAATCAATCACTGAACTACTTGGAGAAAACTCTATTCTCAGCATCAATGGACCTCACC 592
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 543 CTAAATCAATTACGGAACTACTTGGAGAAAACTCTATTCTCAGCATCAATGGACCTCATC 602
Query 593 AAAAAAGGCTTCACACGCTCATTGGCGCGTTCCTCAGATCTCCTCACCTCAAAGACCGGA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAAAAAGGCTTCACACGCTCATTGGCGCGTTCCTCAGATCTCCTCACCTCAAAGACCGGA 662
Query 653 TCACTCGAGACATTGAGGCCTCGGTTGGTATCACTTTGGCTTCTTGGGCTCAACTTCCCT 712
||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
Sbjct 663 TCACTCGAGACATTGAGGCCTCGGTTGTTCTCACTTTGGCGTCTTGGGCTCAACTTCCAT 722
Query 713 TGGTTCATGTTCAAGATGAGGTCAAAAAGATGACGTTTGAGATATTAGTAAAAGTGTTGA 772
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 723 TGGTTCATGTTCAGGATGAGATCAAAAAGATGACGTTTGAGATATTAGTAAAAGTGTTGA 782
Query 773 TGAGCACATCTCCTGGTGAAGATTTGGACATTCTCAAACTTGAGTTCGAAGAATTCATCA 832
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 783 TGAGCACATCTCCTGGTGAAGATATGAACATTCTCAAACTTGAGTTCGAAGAATTCATCA 842
Query 833 AGGGTTTGATTTGTATTCCC-ATCAAATTCCCTGGCACTAGACTCTATAAATCCCTAAAG 891
| ||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 843 AAGGTTTGATTTGTA-TCCCAATCAAATTCCCTGGCACTAGACTCTACAAATCCTTAAAG 901
Query 892 GCGAAAGAGAGGTTAATAAAGATGGTAAAAAAGGTTGTGGAAGAGAGACAAGTGGCAACG 951
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 902 GCGAAAGAGAGGTTAATAAAGATGGTAAAAAAGGTTGTGGAGGAGAGACAAGTGGCGATG 961
Query 952 ACAACGAAGTCTCCGGTGAATGACGTGGTGGACGTGCTTCTAAGAGACGGTTGTGACGGT 1011
||||||| |||||||| ||||||||||||||||| ||||| | ||| ||||||
Sbjct 962 ACAACGACGTCTCCGGCAAATGACGTGGTGGACGTACTTCT-A-AGA-------GACGGT 1012
Query 1012 GGTGATTCAGAGAAGCAATCTCAGCCGTCGGATTTCGTCAGCGGAAAGATCGTAGAGATG 1071
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1013 GGTGATTCAGAGAAGCAATCTCAACCGTCAGATTTCGTCAGCGGAAAGATCGTAGAGATG 1072
Query 1072 ATGATACCCGGAGAGGAAACAATGCCAACGGCGATGACATTGGCTGTCAAATTCCTAAGT 1131
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1073 ATGATACCCGGAGAGGAAACAATGCCAACGGCGATGACCTTGGCTGTCAAATTCTTAAGT 1132
Query 1132 GACAACCCCGTCGCTCTAGCCAAACTCGTGGAGGAGAATATGGAGATGAAGAGGCGTAAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GACAACCCCGTCGCTCTAGCCAAACTCGTGGAGGAGAATATGGAGATGAAGAGGCGTAAA 1192
Query 1192 TTGGAGTTGGGAGAAGAATATAAGTGGACCGATTACATGTCTCTCTCTTTTACTCAAAAT 1251
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1193 TTGGAATTGGGAGAAGAATACAAGTGGACCGATTATATGTCTCTCTCTTTTACTCAAAAT 1252
Query 1252 GTGATAAACGAAACACTGAGAATGGCTAACATTATTAACGGGGTGTGGAGGAAAGCTCTC 1311
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTGATAAACGAAACGCTTAGAATGGCTAACATTATTAACGGGGTGTGGAGGAAAGCTCTC 1312
Query 1312 AAAGATGTAGAAATTAAAGGTTACTTAATACCAAAAGGATGGTGTGTATTGGCATCATTC 1371
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1313 AAGGATGTAGAAATTAAAGGTTACTTAATACCGAAAGGATGGTGTGTATTGGCATCATTC 1372
Query 1372 ATATCGGTTCACATGGATGAAGACATTTATGATAATCCCTATCAATTCGATCCGTGGAGA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATATCGGTTCACATGGATGAAGACATTTATGATAATCCCTATCAATTCGATCCGTGGAGA 1432
Query 1432 TGGGACAGGATTAATGGATCGGCAAACAGTAGTATTTGCTTCACACCCTTTGGTGGTGGG 1491
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1433 TGGGACAGAATTAATGGATCGGCAAACAGCAGTATTTGCTTCACACCCTTTGGTGGTGGG 1492
Query 1492 CAAAGGTTATGTCCTGGTTTAGAACTATCGAAGCTCGAAATATCCATTTTTCTTCACCAC 1551
|||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1493 CAAAGGCTATGTCCTGGTTTAGAGCTGTCGAAGCTCGAAATATCCATCTTTCTTCACCAC 1552
Query 1552 CTCGTAACCCGATACAGTTGGACGGCTGAGAAAGACGAGATCGTGTCATTTCCGACTGTG 1611
|| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1553 CTTGTAACCCGGTACAGTTGGACGGCTGAGGAAGACGAGATAGTGTCATTTCCGACTGTG 1612
Query 1612 AAGATGAAGCGGAGGCTCCCGATCCGTGTGGCTACTGT---TGATAGTGCCTCTCGGATC 1668
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||
Sbjct 1613 AAGATGAAGCGGAGGCTCCCGATCCGAGTGGCTACTGTAGATGATAGTGCTTCTCCGATC 1672
Query 1669 TCACTTGAAGATCATTGATAGATCCTTTTAAAAGAACAAAACTGTTTGTGCAA-GAGGAA 1727
|||||||||||||||| ||||||| ||| ||| |||||||||||||||||||| ||||||
Sbjct 1673 TCACTTGAAGATCATTAATAGATCATTTCAAA-GAACAAAACTGTTTGTGCAAAGAGGAA 1731
Query 1728 GCAGAGAAGTAACCAAATTATCTTATaaaaaaaTAGTAGAGAAGAGAAGCAAACAAGATT 1787
|||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1732 GCAGAGAAGTAAACAAATGATCTTATTAACAAATAGTAGAGAAGAGAAGCAAACAAGATT 1791
Query 1788 GGTGGGTAAGGCAGAAAGAACCATACGTACAGCTAGTGATGGCTCAAAGATGAGAGATTC 1847
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GGTGGGTAAGACAGAAAGAGCCATACGTACAGCTAGTGATGGCTCAAAGATGAGAGATTC 1851
Query 1848 TAATTATATATTAtttttt-tttGTCATGTCAAATTATAAGCGTTGGTTAGGGTGTCCCT 1906
|||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1852 TAATTATA-ATT-TTTTTTGTTTGTCATGTCAAATTATAAGCGTTGGTTAGGTTGTCCCT 1909
Query 1907 TTCTCTTT-ATTTATCGTACCAAACGCAAGTTGAgatatgattccatatatatatatgga 1965
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1910 TTCTCTTTTATTTATCGTACCAAACGCAAGTTGAGATATGATTCCATATATAT----GGA 1965
Query 1966 tgatagatatgtatattaatatataCCTTCTTCCTTTTT-GGCAGCTATTAACATTATGC 2024
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1966 TGATAGATATGTATATTAATATATACCTTCTTCTTTTTTTGGCAGCTATTAACATTATGC 2025
Query 2025 CCATGTCGTCTCTATCTAGCTTTTGTTTTATGCTCGAGAAATTTTAGACGAAAATATAT 2083
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2026 CTATCTCGTCTCTATCTAGCTTTTGTTTTATGCTCGAGAAAATTTAGACGAAAATATAT 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5