BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491005
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36260.1 | Symbols: STY2, SRS2 | Lateral root primordium (LR... 1973 0.0
> AT4G36260.1 | Symbols: STY2, SRS2 | Lateral root primordium (LRP)
protein-related | chr4:17155556-17157245 REVERSE LENGTH=1357
Length=1357
Score = 1973 bits (1068), Expect = 0.0
Identities = 1254/1337 (94%), Gaps = 39/1337 (3%)
Strand=Plus/Plus
Query 1 gagagagagagagagagaTCTTGGAGAACATTCGAGTTTAGATTC-GA-AG-AGCAAAAA 57
|||||||||| |||||||||||| ||||||||||| ||||||||| || || ||||| ||
Sbjct 35 GAGAGAGAGAAAGAGAGATCTTGTAGAACATTCGAATTTAGATTCGGAGAGCAGCAACAA 94
Query 58 CA-CC-C-A-C-AAGGGAGTATAAGAAGGCTGAATTTGAGTGAGAAGAAGAAGGAGAAAA 112
|| || | | | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 95 CACCCACAAGCTAAGGGAGTAT---AAGGCTGAATTTGAGTGAGAAGAAGAAGGAGAAAA 151
Query 113 AAGGATAAGGATTTCATGGTAATTAGGGTTTCTGAATTATGGATATTGCTGGGTCAAGAT 172
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 152 AAGGATAAGGATTTCATGGTAATTAGGGTTTCTGAATTATGGATATAGTTGGGTCAAGAT 211
Query 173 TAGGGTTTAAAGTGTTAGGTCTTAAAAAATGGCTGGGATATTCTCATTAGGAGGTaacaa 232
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TAGGGTTTGAAGTTTTAGGTCTTAAAAAATGGCTGGGATATTCTCATTAGGAGGT----- 266
Query 233 caacaacaacaacaacaacggagacgaagaagaagaaaatcaacaacaacaaaagacaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 ----AACAACAACAACAACGGAGACGAAGAAGAAGAAAATCAACAACAACAAAAGACAAA 322
Query 293 TTGGGTTTGGTATAGATCAAACACAAACACCAATAATACCAACCCAAGCTCGAGCCAACA 352
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 323 TTGGGTTTGGTATAGATCAAACGCAAACACCAATAATATCAACCCAAGCTCGAGCCAACA 382
Query 353 AGTATGGCAGATTCCACCAGAGCAGATGCTCATGCATCATCATCCACATCCACAACAACA 412
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 383 AGTATGGCAGATTCCACCAGAGCAGATGCTCATGCATCATCATTCACATCCACAACAACA 442
Query 413 AAGCTTAGATCTTTATCCAGGTCATCAGATCGACGTCTCTGATTTAGCCACTTCATCAAG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AAGCTTAGATCTTTATCCAGGTCATCAGATCGACGTCTCTGATTTAGCCACTTCATCAAG 502
Query 473 ATCCATCACCATAAGCTGTCGGGACTGTGGGAACCAAGCCAAGAAAGACTGCACTCACAT 532
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 ATCCATCACCATTAGCTGTCGGGACTGTGGGAACCAAGCCAAGAAAGACTGCACTCATAT 562
Query 533 GCGTTGCAGGACTTGCTGTAAGAGCCGTGGATTCGATTGTTCCACTCACGTTAGGAGCAC 592
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 563 GCGTTGCAGGACTTGCTGTAAAAGCCGTGGATTCGATTGTTCCACTCACGTCAGGAGCAC 622
Query 593 GTGGATCCCCGTTGCGAGACGCCGCGAGAGACAACAGCAGCTTCATATGTCCACATCTGG 652
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTGGATCCCCGTTGCGAGGCGCCGCGAGAGACAACAGCAGCTTCATATGTCCACATCTGG 682
Query 653 AGGTGGCGGCGGAAGCGGTAGTGGTGGCGGTGGAGGCGGCGGTTCGAGTATCCCTAAACG 712
|||||||||||||||||||||||| || | |||||| ||||||||||||||||| |||||
Sbjct 683 AGGTGGCGGCGGAAGCGGTAGTGGCGGTGCTGGAGGAGGCGGTTCGAGTATCCCAAAACG 742
Query 713 CCACAGGGATACTACTCTTCCAGGAACATCCTCCTCTTCTCGCTTACCATCCGACTCAGC 772
||| ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 743 CCATAGGGACCCTACTCTTCCAGGAACATCCTCCTCTTCTCGCTTGCCATCCCACTCAGC 802
Query 773 AGGGTTAGAAATGGGGGAGGCAAGTTTTCCGGGGGAAGTGAGCTCAGATGCGCTTTTTCG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AGGGTTAGAAATGGGGGAGGCAAGTTTTCCGGGGGAAGTGAGCTCAGATGCGCTTTTTCG 862
Query 833 GTGTGTTAAAATGAGTGGCGTAGATGATGGAGGAGATGGTCAATATGCTTATCAAACGAC 892
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 863 GTGTGTTAAAATGAGTGGCGTAGATGATGGAGGAGATGGTCAGTACGCTTATCAAACGAC 922
Query 893 GGTCAATATTGGAGGTCATCTCTTCAAAGGAATTCTGTATGACCAAGGCCCTGAAAGCAG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GGTCAATATTGGAGGTCATCTCTTCAAAGGAATTCTGTATGACCAAGGCCCTGAAAGCAG 982
Query 953 CTACATGAGTGGCGGTAGTGGCGGAAGCGATCATCAAAGCTCATCCGCAGGAGGCGGAGG 1012
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 983 CTACATGAGTGGCGGTAGTGGCGGAAGCGATCATCAGAGCTCATCCGCAGGAGGCGGAGG 1042
Query 1013 AGGAGGAAATCAGTTTAATCCTCCCGTTGTGACTGACGGTGGCGGAGGAGTGTCTTCGGC 1072
||||||| ||| |||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 1043 AGGAGGACATCCGTTTAATCCTCCAGTTGTGACCGACGGTGGCGGAGGAGTATCATCGGC 1102
Query 1073 CATGTTTGTAGATCCTAATTCTGGTGGTTACTATTCAAGTAACATGACGACTAGTGTGTT 1132
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CATGTTTGTAGATCCAAATTCTGGTGGTTACTATTCAAGTAACATGACGACTAGTGTGTT 1162
Query 1133 CATGCCACCAGGTACGCAATTCTATCAAAACCCACCGAGATCTTGATTAAATCAAGAACT 1192
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1163 CATGCCACCAGGTACGCAATTCTATCAAAATCCACCAAGATCTTGATTAAATCAAGAACT 1222
Query 1193 CGAGttttt-ttGTT-TTATAGTGAGTGATTCTATATATGTAATGTGTCTTTTGTTTT-- 1248
|| ||||| || || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1223 TGACTTTTTATTTTTGTTATA-T-AGTGATTCTATATATGTAATGTGTCTTTTGTTTTGT 1280
Query 1249 --C-------A-T-AT--GTAATACTTAGACGATTTAAACATTTGTACGTCTGTTTGTTG 1295
| | | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1281 TGCTCTGGTCAATCATATGTAATACTTAGACGATTTAAACATTTGTATGTCTGTTTGTTG 1340
Query 1296 TTATGTATAATGTGTGT 1312
| ||||||||||| |||
Sbjct 1341 TCATGTATAATGTATGT 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5