BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491006
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36250.1 | Symbols: ALDH3F1 | aldehyde dehydrogenase 3F1 | c... 2610 0.0
> AT4G36250.1 | Symbols: ALDH3F1 | aldehyde dehydrogenase 3F1 |
chr4:17150869-17153578 FORWARD LENGTH=1812
Length=1812
Score = 2610 bits (1413), Expect = 0.0
Identities = 1619/1714 (94%), Gaps = 32/1714 (2%)
Strand=Plus/Plus
Query 1 TTCATTTTCCACTTTTAACCATCACCCTATAAGTGGTTATAAATTA-TAACTTGAAATAG 59
||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 3 TTCCTTTTCCACTTTTAACCATCACCCTATAAGTGGTTAT-AACTAGTAACTTGAAATAG 61
Query 60 AAACACTCTAGCTCTAAAAGAGG--------CAAAC-A-----AGCTTTTTATAAGCAAA 105
|||||||||| |||||||||||| ||||| | |||||||||||| ||||
Sbjct 62 AAACACTCTATCTCTAAAAGAGGCAACCAAACAAACAAGGTCTAGCTTTTTATAACCAAA 121
Query 106 CTCTGCTTCTGAACAGAGTTAG-C-Cagagagaggagccatggaaggtatgaaggagact 163
|||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 122 CTCTGCTTCTGAACAGAGTTAGTCAAAGAGAGAGAAGCCATGGAAGCTATGAAGGAGACT 181
Query 164 gtggaggagagcttgagagagatgagagagaCGTTTGCTAGTGGGAGGACGAGGAGTCTG 223
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 GTGGAGGAGAGCTTGAGAGAGATGAGAGAGACGTTTGCGAGTGGGAGGACGAGGAGTCTG 241
Query 224 AAGTGGAGGAAGGCACAGATCGGAGCTATATACGAGATGGTTAAAGACAACGAAGACAAG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAGTGGAGGAAGGCACAGATCGGAGCTATATACGAGATGGTTAAAGACAACGAAGACAAG 301
Query 284 ATCTGTAGTGCTCTGTTTCAAGATTTGGGCAAACACAGTACTGAAGCTTTTAGAGATGAG 343
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATCTGCAATGCTCTGTTTCAAGATTTGGGCAAACACAGTACTGAAGCTTTTAGAGATGAG 361
Query 344 CTTGGTGTTGTCTTGAGATCAGCTACTGTTGCAATCAACTCTCTTGATAAATGGGCCGTC 403
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 362 CTTGGTGTTGTCTTGCGAACAGCTACTGTTGCAATCAACTGTCTTGATAAATGGGCCGTC 421
Query 404 CCCAAACATAGCAACCTTCCTCTGTTGTTCTACCCAGCAAAAGGGAAAGTGATATCGGAA 463
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 422 CCCAAACATAGCAAACTTCCTCTGTTGTTCTACCCAGCAAAAGGGAAAGTCATATCGGAA 481
Query 464 CCGTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATCTTTGTCTCTGGAT 523
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CCCTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATCTTTGTCTCTGGAT 541
Query 524 CCATTGATTGGGGCAATAGCAGCAGGGAATACCGTGCTTCTCAAGTCATCTGAACTAAGC 583
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 CCATTGATTGGGGCAATAGCAGCAGGAAATACCGTGCTTCTCAAGTCATCTGAACTAAGC 601
Query 584 CCTAACGCATCTGCCTTCCTTGCGAAGACAATCCCGGCTTATCTCGATACTAAAGCTATC 643
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 602 CCTAACGCATCTGCCTTCCTTGCCAAGACAATTCCAGCTTATCTCGATACTAAAGCCATC 661
Query 644 AAAGTTATCGAAGGAGGACCTGATGTCGCCACTATCCTCTTGCAGCATCAGTGGGACAAG 703
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 662 AAAGTTATCGAAGGAGGACCTGATGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAG 721
Query 704 ATCTTCTTCACCGGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAGCACAGCAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATCTTCTTCACCGGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAGCACAGCAT 781
Query 764 TTGACTCCTGTGACACTGGAGCTTGGTGGAAAATGTCCCACTATTGTTGATCATCACACC 823
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 CTGACTCCTGTGACATTGGAGCTTGGTGGAAAATGTCCCACCATTGTTGATCATCACACC 841
Query 824 ATTTCAAAGAACATCAAGTCGGTTGTGAAGAGGATTGCTGGAGGAAAATGGGGATCTTGC 883
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 842 ATTTCAAAGAACATCAAGTCGGTTGTCAAGAGGATTGCTGGAGGAAAATGGGGATCTTGC 901
Query 884 AGTGGACAAGCTTGTATCTCTGTAGATTACGTTCTTATCGAAAAGAGTTACGCGTCTTCT 943
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 902 AATGGACAAGCTTGTATCTCTGTAGATTACGTTCTTATCGAAAAGAGTTTCGCGCCTACT 961
Query 944 CTGATTGATATGTTGAAGCCTACGATAAAGTCTTTCTTTGGGGAAAATCCAAAAGAATCT 1003
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 962 CTGATTGATATGTTGAAGCCTACGATAAAGTCTTTCTTTGGCGAAAATCCTAAAGAATCT 1021
Query 1004 GGATGTCTCTCAAGGATTGCAA-CAAAGCAACACGTTCAGAGACTGTCTCGTCTTCTTAA 1062
|||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1022 GGATGTCTCTCAAGGATTGCAAACAA-GCACCACGTTCAGAGACTGTCTCGTCTTCTTAG 1080
Query 1063 TGATCCTCGTGTCCAAGCATCCATCGTCTATGGTGGTTCCATAGACGAAGAGAAGCTGTA 1122
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1081 CGATCCTCGTGTCCAAGCTTCCATCGTCTATGGTGGTTCTATAGACGAAGATAAGCTGTA 1140
Query 1123 TGTTGAGCCAACGATCCTGTTGGATCCTCCTCTTGATTCTGAGATCATGAATGAAGAGAT 1182
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1141 TGTTGAGCCAACGATCTTGTTGGACCCTCCTCTTGATTCTGAGATCATGAATGAAGAGAT 1200
Query 1183 CTTTGGTCCAATTCTCCCGATTATTACTGTACGTGACATCCAAGAAAGCATAGGGATCAT 1242
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1201 CTTTGGTCCAATTCTCCCGATTATCACGGTACGTGACATCCAAGAAAGCATAGGGATCAT 1260
Query 1243 TAAGACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAAC 1302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAATACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAAC 1320
Query 1303 TAGAATCTTGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGTA 1362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TAGAATTTTGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGTA 1380
Query 1363 TATGTGTGATGCGTTGCCCTTTGGAGGAGTAGGAGAAAGTGGAATAGGGAGGTATCACGG 1422
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 TATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGG 1440
Query 1423 GAAATACTC-TTTCGATTGTTTCAGTCACGAGAAAGCAATTATGGAAGGAAGCTTAGGAA 1481
||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1441 GAAATACTCATTT-GATTGTTTCAGTCACGAGAAAGCAATAATGGAAGGAAGCTTAGGTA 1499
Query 1482 TGGATCTTGAAGCTCGATACCCTCCATGGAACAACTTCAAGCTCACCTTCATTAGACTTG 1541
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1500 TGGATCTTGAAGCTCGATACCCTCCATGGAACAACTTCAAGCTCACCTTCATCAGACTCG 1559
Query 1542 CATTTAGTGAAGCGTACTTCAAGCTTATCCTCCTTATGCTTGGTCTCAAAAGATAAAAGT 1601
||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1560 CATTTCGTGAAGCTTACTTCAAGCTTATCCTCCTTATGCTTGGTCTTAAAAGATAAAAGG 1619
Query 1602 GGgagagtgagagagtgagagagagaCACATACACACGCACAGA--CGATATAAGTGATT 1659
|||| ||||||||| ||||| ||||||||||| ||||| | ||||||||||||
Sbjct 1620 GGGAAAGTGAGAGAC--AGAGA----CACATACACACAAACAGAGACAATATAAGTGATT 1673
Query 1660 GAATTATATATCACACTTATGTTTGCTTTTCATA 1693
|||||| || ||||||||||||||||| |||||
Sbjct 1674 GAATTACAT--CACACTTATGTTTGCTTATCATA 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5