BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491007
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 | ch... 1085 0.0
AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 | ch... 128 9e-29
> AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 |
chr4:17147196-17148221 REVERSE LENGTH=907
Length=907
Score = 1085 bits (587), Expect = 0.0
Identities = 814/917 (89%), Gaps = 42/917 (5%)
Strand=Plus/Plus
Query 1 AGACAAAAATGGAGTGTGTAGAACTAGAAGCATTTCTCGGTGATTTTTCCGTCGACGATC 60
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 3 AGACAAAAATGGA--GTGT-G---TAGAAGCATTTCTCGGTGATTTTTCCGTCGACGATC 56
Query 61 TTCTCGACCTCTCTAACGCCGACACTGCTTTCGTACGTGAAGAGTCGTCTTCATCTCAAA 120
|||||||||||||||||||||||| | ||| | | |||||||||||| || ||||
Sbjct 57 TTCTCGACCTCTCTAACGCCGACA---C-TTC-T---T-TAGAGTCGTCTTCGTCACAAA 107
Query 121 GAGAAGAAGGCGAACAAGAACGTGAGAACGCTAAGAGCTTTTCCGACCAAAGTACCCGTC 180
|| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 108 GAAAAGAAGACGAACAAGAACGTGAGAAATTTAAGAGCTTTTCTGACCAAAGTACCCGTC 167
Query 181 TTTCACCACTGGAGGATCTCTTATCTTTTCCCGGCGACGTTCCAGTTGGTGATTTGGAGG 240
||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 168 TTTCACCGCCAGAGGATCTCTTATCTTTTCCCGGCGACGCTCCGGTTGGTGATTTGGAGG 227
Query 241 ACCTAGAGTGGCTATCCAACTTCGTGGAGGATTCTTTCTCAGAATC-TCATCTTTCCAGT 299
|| |||||||| |||||||||||||||||||||||||||||||||| | || |||| |||
Sbjct 228 ACTTAGAGTGGTTATCCAACTTCGTGGAGGATTCTTTCTCAGAATCGT-ATATTTCGAGT 286
Query 300 GATTTTCCGGTGACTCCAGTCGCGTCAGTGGAGGTTCAGAGACAGTGCGTTCCGGTTAAA 359
||||| ||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 287 GATTTCCCGGTGAATCCAGTCGCGTCGGTGGAGGTTCGGAGACAGTGCGTTCCTGTTAAA 346
Query 360 CCTAGAAGCAAACGCCGCCGCACCAACGGCCGTATCTGGTCTCTGGAGTCTCCATGTCGG 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 347 CCTAGAAGCAAACGCCGCCGCACCAACGGCCGTATCTGGTCTATGGAGTCTCCATCTCCT 406
Query 420 CTGCTATCCACCGCCGTTGCCA-AAGAGAAGAAGAGATGGAGACATAAGGCGGAGGCATC 478
|||||||||||||| ||||||| ||| |||||||||| ||||||| |||| ||| |||||
Sbjct 407 CTGCTATCCACCGCTGTTGCCAGAAG-GAAGAAGAGAGGGAGACAGAAGGTGGATGCATC 465
Query 479 TTGCGGTGGCGAAGTCCAGCAGCAACAGCCGAGGCGATGCTGCAGCCATTGTGGAGTCCA 538
| |||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 466 GTACGGTGGCGTAGTCCAGCAGCAGCAGCTGAGGCGGTGCTGCAGCCATTGTGGAGTCCA 525
Query 539 GAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAAACATTATGTAATGCTTGTGG 598
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 526 GAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAGACACTGTGTAATGCTTGTGG 585
Query 599 GGTCCGGTTTAAGTCGGGTCGGCTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATT 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 GGTCCGGTTTAAGTCGGGTCGACTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATT 645
Query 659 CACCACCGAGATTCACTCGAACTCTCACCGGAAAGTGTTGGAGCTGCGACTCATGAGAGC 718
||||| |||||||||||| |||||||||||||||||||||||||| || ||||||| ||
Sbjct 646 CACCAACGAGATTCACTCTAACTCTCACCGGAAAGTGTTGGAGCTACGGCTCATGAAAGT 705
Query 719 GGCGGATCCGGGTCGGGTTTAACCCGTTTTGTTTTTCTATCTTAAAATGTTA--A---C- 772
||||||||||| |||||||||| || |||| ||| ||||||| |||| ||| | |
Sbjct 706 GGCGGATCCGGCTCGGGTTTAAGCCATTTT-TTT--CTATCTTGAAATTTTATCAATGCC 762
Query 773 A-----ATT----AATCTTGTAAGCAGAGAATCAGAGAGGGATCCGTAGACTGCTTTCAG 823
| ||| |||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 763 ATGTGCATTGTGTAATCTTGTAAACAGAGAATCAGAGAGAGATCCGTAGACTGTTTTCAC 822
Query 824 ATTTATGAACTTAAGCTATAATTAGAGACAATTTTATTTTTATAGA--AT--ATGATTAG 879
||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 823 ATTCATGAAGTTAAGCTATAATTAGAGACAATTTTATTTG-ATAGAGTATGCATGATTAG 881
Query 880 AAATCATAATCATTAAA 896
||||||| |||||||||
Sbjct 882 AAATCATGATCATTAAA 898
> AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 |
chr3:18973213-18974892 FORWARD LENGTH=1297
Length=1297
Score = 128 bits (69), Expect = 9e-29
Identities = 129/158 (82%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 525 CATTGTGGAGTCCAGAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAAACATTA 584
||||||||||| ||||| ||||| || |||||| || |||||||| ||||| || ||
Sbjct 807 CATTGTGGAGTTCAGAAAACGCCGCAGTGGAGAGCAGGACCATTAGGAGCGAAGACGTTG 866
Query 585 TGTAATGCTTGTGGGGTCCGGTT-TAAGTCGGGTCGGCTT-TTACCCGAATATAGACCCG 642
|||||||| ||||| || | ||| || ||||||||| || ||||||||||||||||||
Sbjct 867 TGTAATGCGTGTGGTGTGC-GTTACAAATCGGGTCGG-TTACTACCCGAATATAGACCCG 924
Query 643 CTTGTAGCCCAACATTCACCACCGAGATTCACTCGAAC 680
|||||||||||||||| | | ||| ||||||| |||
Sbjct 925 CTTGTAGCCCAACATTTTCGAGTGAGCTTCACTCAAAC 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5