BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491017
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36160.1 | Symbols: ANAC076, VND2, NAC076 | NAC domain conta... 2165 0.0
AT2G18060.1 | Symbols: VND1, ANAC037 | vascular related NAC-dom... 712 0.0
AT4G36170.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 185 8e-46
> AT4G36160.1 | Symbols: ANAC076, VND2, NAC076 | NAC domain containing
protein 76 | chr4:17110747-17114141 REVERSE LENGTH=1465
Length=1465
Score = 2165 bits (1172), Expect = 0.0
Identities = 1351/1435 (94%), Gaps = 22/1435 (2%)
Strand=Plus/Plus
Query 1 TCTCTTCATATTCCCCGAAACTTATAACCAAGTTCAATATCAGTTCTCTCTGTCGTCGAT 60
|||||||| |||| |||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 4 TCTCTTCACATTCACCGAAACTTATAACCAAGATCAATATCAGTTCTCTC--TC-TCGAT 60
Query 61 GATCATCATCTTCTACACATCCATCTCTCTTTGA---CTTCTTCTTC-T-TTACTAT--C 113
|| |||||||||||||||| |||||| ||||||| |||||||||| | ||| ||| |
Sbjct 61 GAACATCATCTTCTACACAGCCATCTTTCTTTGACTTCTTCTTCTTCTTCTTAATATAAC 120
Query 114 -CCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTATTCTATACACAAATATAT-CTTCT 171
||||||||||||||||||||||||||||||||| | ||||||||| || ||| |||
Sbjct 121 GGCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTGTCCTATACACATATCTATAATTCC 180
Query 172 ACAGGTTGAAGAAAAGCAATTATGGAATCAGTGGATCAATCATGTAGTGTTCCTCCGGGA 231
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ACAGGTTGAAGAAAAGAAATAATGGAATCGGTGGATCAATCATGTAGTGTTCCTCCGGGA 240
Query 232 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 300
Query 292 TCCCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 351
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 360
Query 352 GATTTACAAGAGAGATGCCGAATCGGATACGAGGAAAGAAATGAATGGTATTTCTTCAGC 411
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GATTTACAAGAGAGCTGCCGAATCGGATATGAGGAAAGAAATGAATGGTATTTCTTCAGC 420
Query 412 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 480
Query 472 TGGAAAGCCACGGGTCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 531
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGAAAGCCACGGGCCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 540
Query 532 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 600
Query 592 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 660
Query 652 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACGGAAACTTGGAGC 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACAGAAACTTGGAGC 720
Query 712 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTAAGCTCGGTTGCGGAGCCTCTCAGT 771
|||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
Sbjct 721 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTACGCTCAGTTACGGAGCCTCTTAAC 780
Query 772 TACGTATCTAAGCAGAAACAAAACATTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 831
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 TACGTATCTAAGCAGAAACAAAACGTTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 840
Query 832 GAAGGATCAGATATCGGTTTGAACTTTATCCACTGCGATCAATTCATTCAACTTCCGCAG 891
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GAAGGATCAGATATCGGTTTAAACTTCATCCACTGCGATCAATTCATTCAACTTCCGCAG 900
Query 892 CTTGAAAGCCCTTCACTCCCTCTTACGAAGAGGCCAGTGAACTCGACGTCAATTACATCA 951
|||||||||||||||||||||||||| || || ||||||| || ||||||||||||||||
Sbjct 901 CTTGAAAGCCCTTCACTCCCTCTTACCAAAAGACCAGTGAGCTTGACGTCAATTACATCA 960
Query 952 TTGGAGAAGAATCAAACTAACTACAAAAGACAGTTAATAGAAGATGATGTGAGCTTCAAT 1011
|||||||||||| ||| || |||||||||||| ||||||||||| |||||||||||||||
Sbjct 961 TTGGAGAAGAATAAAAATATCTACAAAAGACATTTAATAGAAGAGGATGTGAGCTTCAAT 1020
Query 1012 GCGTTGATAAGTAGTGAAAATAAAGGTAACAAGAAGAAGAAAACATCAGTGATGACGACG 1071
||| | |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1021 GCGCTAATAAGTAGTGGAAATAAAGATAAGAAGAAGAAGAAAACATCAGTGATGACGACG 1080
Query 1072 GACTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1131
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1140
Query 1132 TCAGGTTTCGGAGGTCATCAAGAAGAAGATAACAATAAAATCAGTCATTACAATAACGAA 1191
|| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1141 TCGGGTTTTGGAGGTCATCATGAAGAAGATAACAATAAAATCGGTCATTACAATAACGAA 1200
Query 1192 GAGAGCAATAACAACGGA---GTAGAAACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1248
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GAGAGCAATAACAAGGGATCAGTAGAGACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1260
Query 1249 GAAGAGAACAGATTCATCAGTGGATTCTTGTGTTCCAACTTGGACTATGACTTATATAGT 1308
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 GAAGAGAACAGATTCATCAGTGGATTATTGTGTTCCAACTTGGACTATGACTTATATAGG 1320
Query 1309 GATTTGCATGTTTGATAAAAGATAACGCTATAGTATGGTGCGTAAAAATGTTCGCTATAT 1368
||||| |||||||||||||||||||| ||||| |||||||||||| | || |||||||
Sbjct 1321 GATTTACATGTTTGATAAAAGATAACACTATAATATGGTGCGTAACG-T-TT-GCTATAT 1377
Query 1369 AGGTACGTAGAAT--ATTGATA-AGAGATAACATATATAAAAATGTGTGAAAGAT 1420
||||||||||||| ||||||| || |||||||||||||| |||||||||||||
Sbjct 1378 AGGTACGTAGAATTTATTGATACAGT-ATAACATATATAAAGATGTGTGAAAGAT 1431
> AT2G18060.1 | Symbols: VND1, ANAC037 | vascular related NAC-domain
protein 1 | chr2:7848399-7850303 REVERSE LENGTH=1098
Length=1098
Score = 712 bits (385), Expect = 0.0
Identities = 785/970 (81%), Gaps = 60/970 (6%)
Strand=Plus/Plus
Query 209 AATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTT 268
|||| ||||| |||||||| ||||| || |||||||| || || |||||||| || || |
Sbjct 14 AATCTTGTAGCGTTCCTCCAGGATTTAGGTTCCATCCGACGGACGAAGAGCTTGTCGGGT 73
Query 269 ACTATTTAAGGAA-AAAAGTTGCATCCCAAAAGATCGATCTTGATGTCATAAGAGATATT 327
||||| ||||||| |||| | ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 74 ACTATCTAAGGAAGAAAA-TCGCATCGCAAAAGATTGATCTCGACGTCATCAGAGACATC 132
Query 328 GATCTCTACAGAATCGAACCATGGGATTTACAAG-AGAGATGCCGAATCGGATACGAGGA 386
|||||||||||||| |||||||||||| |||||| | | ||| |||||||| || |||||
Sbjct 133 GATCTCTACAGAATAGAACCATGGGATCTACAAGAACA-ATGTCGAATCGGTTATGAGGA 191
Query 387 A-AGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAA 445
| | ||||||||||||||| || || ||||| || |||||||||||||| || |||||||
Sbjct 192 ACA-AAATGAATGGTATTTTTTTAGTCACAAGGACAAGAAATATCCAACGGGGACAAGAA 250
Query 446 CAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGTCGAGACAAGGCTGTTTACG 505
| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 251 CTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACG 310
Query 506 ACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGTTCTACAAAGGAAGAGCCCCTA 565
|||| ||||||| ||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 311 ACAAAACAAAACTAATTGGTATGAGGAAAACACTTGTGTTCTACAAAGGACGTGCACCTA 370
Query 566 ATGGCCAA-AAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCA 624
|||| ||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 371 ATGG-CAAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCA 429
Query 625 CCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAAAGCCA-ATGACCGG 683
|| || ||||||||||| ||||||||||||||||| ||||| |||||| | | || ||
Sbjct 430 CCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAA-AAAAAG--AGCT-ACAGG 485
Query 684 GCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGACGAA-TT--ACCGAG 740
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 486 GCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGATGAAGTTGCACCGAA 545
Query 741 TGGAGT-AAGCTCGGTTGCGGAGCCTC-TC-AGTTACGTATCTAAGCAGAAACAAAACAT 797
|||||| || ||||||| ||| || | | | |||| ||||||||||| |||| |||||
Sbjct 546 TGGAGTTAA-CTCGGTTATGGACCC-CATTGA-TTACATATCTAAGCAGCAACATAACAT 602
Query 798 TTTTGC-ACAAGATTTAATGT-TCAAGCAAGAACTAGAAGGA-TCAGAT-ATCGGTTTGA 853
||||| | ||| ||| |||| | |||||||||||||||||| | | | || ||| | |
Sbjct 603 TTTTGGGA-AAGGTTTGATGTGT-AAGCAAGAACTAGAAGGAATG-GTTGAT-GGTATAA 658
Query 854 ACTTTATCCACTGCGA-TCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCCT 912
||| ||| || | ||| |||||||||||| || || || || |||||||||| |||||
Sbjct 659 ACTATATACAAT-CGAATCAATTCATTCAGCTCCCACAACTCCAAAGCCCTTCTCTCCCG 717
Query 913 CTTACGAAGAGGCCAGTGAA-CTCGACGTCAATTACATCATTGGAGAAGAATCAAACTAA 971
|| | ||| || || | || ||||| ||| || |||||| |||| || ||| | | ||
Sbjct 718 CTGATGAAAAGACCT-TCAAGCTCGATGTCCATAACATCAATGGATAACAATTA--C-AA 773
Query 972 CTACAAAAGAC-AGTTAATAGAAGATGATGTGAGCTTCAA-TGCGTTGATAAGTAGTGAA 1029
||| ||| | | ||| | ||||| | |||||| | | | || ||||| || ||
Sbjct 774 CTATAAACTCCCA-TTAGC-G--GATGAAGAAAGCTTCGAGT-CATTCATAAG-AG-GAG 826
Query 1030 AATAAAGGTAACAAGAAGAAGAAAACATCA-GTGATGACGACGG-AC-T-GGAGAGCACT 1085
| | || || ||||||||||| | || || |||| ||||| | | |||||| | |
Sbjct 827 AGGATAG--AAG--GAAGAAGAAAA-AGCAAGTAATGATGACGGGAAATTGGAGAG-AGT 880
Query 1086 C-GATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGA---TGGAGTTTCAGGTTTCG 1141
|| || ||||||||||| |||||||||||||||||||| |||| |||| ||||||
Sbjct 881 TAGACAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGACAATGGAACTTCAAGTTTCG 940
Query 1142 GAGGTCATCA 1151
|||||||||
Sbjct 941 CAGGTCATCA 950
> AT4G36170.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:17113872-17119834 FORWARD LENGTH=489
Length=489
Score = 185 bits (100), Expect = 8e-46
Identities = 150/172 (87%), Gaps = 11/172 (6%)
Strand=Plus/Minus
Query 1 TCTCTTCATATTCCCCGAAACTTATAACCAAGTTCAATATCAGTTCTCTCTGTCGTCGAT 60
|||||||| |||| |||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 175 TCTCTTCACATTCACCGAAACTTATAACCAAGATCAATATCAGTTCTCTC--TC-TCGAT 119
Query 61 GATCATCATCTTCTACACATCCATCTCTCTTTGA---CTTCTTCTTC-T-TTACTAT--C 113
|| |||||||||||||||| |||||| ||||||| |||||||||| | ||| ||| |
Sbjct 118 GAACATCATCTTCTACACAGCCATCTTTCTTTGACTTCTTCTTCTTCTTCTTAATATAAC 59
Query 114 -CCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTATTCTATACACAAATAT 164
||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 58 GGCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTGTCCTATACACATATAT 7
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5