BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491018
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36130.1 | Symbols: | Ribosomal protein L2 family | chr4:17... 1397 0.0
AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | ... 1031 0.0
> AT4G36130.1 | Symbols: | Ribosomal protein L2 family | chr4:17097565-17098879
FORWARD LENGTH=1048
Length=1048
Score = 1397 bits (756), Expect = 0.0
Identities = 808/834 (97%), Gaps = 0/834 (0%)
Strand=Plus/Plus
Query 21 AAGAATTATCCATGGGTCGTGTTATCAGAGCTCAACGTAAGGGAGCTGGTTCCGTCTTCA 80
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 38 AAGAATCATCCATGGGTCGTGTTATCAGAGCACAACGTAAGGGAGCTGGTTCCGTCTTCA 97
Query 81 AATCCCACACTCACCACCGTAAAGGTCCGGCCAAATTCAGAAGCCTCGATTTCGGCGAGA 140
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 98 AATCCCACACTCACCACCGTAAAGGTCCGGCCAAATTCAGGAGTCTCGATTTCGGGGAGA 157
Query 141 GAAATGGTTACCTCAAAGGTGTCGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTC 200
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 158 GAAATGGTTATCTGAAAGGTGTTGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTC 217
Query 201 CGTTAGCTCGTGTAGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCG 260
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CATTGGCTCGTGTAGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCG 277
Query 261 TTGCTGCTGAAGGTATGTACACCGGTCAGTTTCTTTACTGTGGGAAGAAAGCTACTCTCG 320
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TTGCTGCTGAAGGTATGTATACCGGTCAGTTTCTTTACTGTGGGAAGAAAGCTACTCTCG 337
Query 321 TCGTTGGAAATGTTCTTCCTCTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAACGTTG 380
|||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 338 TCGTCGGAAATGTTCTTCCTCTCAGATCTATTCCTGAAGGAGCTGTTATTTGTAACGTTG 397
Query 381 AGCATCATGTTGGTGATCGTGGAGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTA 440
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 398 AACATCATGTTGGTGATCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTA 457
Query 441 TCGCTCACAATCCTGATAACGACACCAGCAGGATTAAGTTGCCATCGGGTTCGAAGAAGA 500
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 458 TCGCTCACAATCCTGATAACGACACTAGCAGGATTAAGTTGCCATCGGGTTCGAAGAAGA 517
Query 501 TTGTACCAAGTGGATGCAGGGCTATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGA 560
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGTGCCAAGTGGATGCAGGGCCATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGA 577
Query 561 AGCCAATGCTTAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGCTGGC 620
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 AGCCGATGCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGCTGGC 637
Query 621 CTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATC 697
Query 681 AACATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCCGGACAAAAGGTTGGTC 740
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 698 AACATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCAGGAAAAAAGGTTGGTC 757
Query 741 TTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTTGCTTCTAAGG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 758 TTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTTGCTTCCAAGG 817
Query 801 CAGACTAAGGAGAGAAGGATTCAAGATGAAAtttttcacttttttgggattttt 854
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 818 CAGACTAAGGAGAGGAGGATTCAAGATGAAATTGTTCACTTTTTTGGGATTTTT 871
> AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family
| chr2:7837102-7838304 FORWARD LENGTH=970
Length=970
Score = 1031 bits (558), Expect = 0.0
Identities = 712/786 (91%), Gaps = 12/786 (2%)
Strand=Plus/Plus
Query 28 ATCCATGGGTCGTGTTATCAGAGCTCAACGTAAGGGAGCTGGTTCCGTCTTCAAATCCCA 87
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 46 ATCCATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCA 105
Query 88 CACTCACCACCGTAAAGGTCCGGCCAAATTCAGAAGCCTCGATTTCGGCGAGAGAAATGG 147
|||||||||||| ||||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 106 CACTCACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGG 165
Query 148 TTACCTCAAAGGTGTCGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTCCGT-TAG 206
||||||||| || ||||||||||||||||| |||||||| || ||||||||||| | | |
Sbjct 166 TTACCTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCC-TCTTG 224
Query 207 CTCGTGT-AGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCGTTGCT 265
||||||| | ||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 225 CTCGTGTCA-CTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCC 283
Query 266 GCTGAAGGTATGTACACCGGTCAGTTTCTT-TACTGTGGGAAGAAAGCTACTCTCGTCGT 324
|| ||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 284 GCCGAAGGTATGTACACCGGTCAG-TTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGT 342
Query 325 TGGAAATGTTCTTCCTCTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAACGTTGAGCA 384
|||||||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 343 TGGAAATGTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCA 402
Query 385 TCATGTTGGTGATCGTGGAGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGC 444
||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 403 TCACGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGC 462
Query 445 TCACAATCCTGATAACGACACCAGC-AGGATTAAGTTGCCATCGGGTTCGAAGAAGATTG 503
|||||| ||||| | |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 463 TCACAACCCTGACAGCGACACTA-CTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTG 521
Query 504 TACCAAGTGGATGCAGGGCTATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGC 563
| |||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct 522 TCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGC 581
Query 564 CAATGCTTAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCT 622
| ||||| ||||| || ||||| ||||||||||||||||||||||| |||| | ||||||
Sbjct 582 CGATGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACT-CATGGCCT 640
Query 623 AAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAA 682
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 641 AAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAG 700
Query 683 CATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCCGGACAAAAGGTTGGTCTT 742
|| ||||||||||| ||||||||| | ||||||||||| || ||||| ||||||||||||
Sbjct 701 CACATTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTT 760
Query 743 ATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCT-CTTGCTTCTAAGGC 801
||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 761 ATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCA-GCTGCCAAGGC 819
Query 802 AGACTA 807
||||||
Sbjct 820 AGACTA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5