BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491020
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36110.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1238 0.0
> AT4G36110.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:17089949-17090825 FORWARD LENGTH=877
Length=877
Score = 1238 bits (670), Expect = 0.0
Identities = 824/894 (92%), Gaps = 27/894 (3%)
Strand=Plus/Plus
Query 1 ACACCTTTCTTCAAACATACCAAActctctctctcttccctctcttctcctctctctAGC 60
||||||||||||||||||||||||||||||||| | | || || ||| ||||||||||
Sbjct 1 ACACCTTTCTTCAAACATACCAAACTCTCTCTC-C--CTCT-TC-CCTCTTCTCTCTAGC 55
Query 61 CAAGTTAGATTTCAACAAGGTCAAATCATGGCGATAAAGAAGTCGAACAAAGCGGCCTTG 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 56 CAAGTTAGATTTCAATAAGGTCAAATCATGGCGATAAAGAAGTCGAACAAAGCGGCGTTG 115
Query 121 TCTCAAGCAGCATCTCTAAAGCAAATCTTGAAGAGGTGCTCAAGTCTAGGAAAGAAGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCTCAAGCAGCATCTCTAAAGCAAATCTTGAAGAGGTGCTCAAGTCTAGGAAAGAAGAAT 175
Query 181 CAAGGTAATTGCTACTTCAACGACGTGCCAAAAGGTCACTTTCCGGTATACGTCGGTCAA 240
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 176 CAAGGTAATTGCTACTTCAACGACGTGCCAAAAGGTCACTTCCCGGTCTACGTCGGTCAA 235
Query 241 CACCGAAGTCGCTATGTGGTCCCAATCTCATGGCTAGATCATCCTGAGTTCCAGTCACTC 300
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 236 CACCGAAGTCGCTATGTGGTCCCAATCTCGTGGCTAGATCATCATGAGTTCCAGTCACTC 295
Query 301 CTCCAACTAGCCGAGGAAGAGTTTGGGTTCGAGCACGAGATGGGTCTCACTATACCTTGT 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 296 CTCCAACTAGCCGAGGAAGAGTTTGGTTTCGAGCACGAGATGGGTCTCACTATCCCTTGT 355
Query 361 GATGAAGTCATCTTTCGTTCTCTCATCTCAATGTTCAGATAAAACTCGATATCGAGGACT 420
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 GATGAAGTCGTCTTTCGTTCTCTCATCTCAATGTTCAGATAATACTCGATATCGAGGACT 415
Query 421 GGTC---ATTAGCTCAATTGGTCATTCTCTCGAGAAATATTCCCCTTT-AAGGATGTAAG 476
|||| |||||||||| ||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 416 GGTCTTCATTAGCTCAACTGGTCATTCTCTCAAGAAATATTCCCCTTTTAAGGAAGTAAG 475
Query 477 AGTTTGATCACATTGTCGTCACACTCCAGACTCGG--GATCAAAGCCTCAAAGTTATTAC 534
||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 476 AGTTTGATCACATTGTC---ACACTCCAGACTCGGAAGATCAAATCCTCAAAGTTATTAC 532
Query 535 CAAGAATCAAGAAATAAGGAATGTATGCAATTAATATATTATTTAGGGttttttt--CTT 592
|||||| ||||||||||||||| |||||||| ||| | ||||||| ||||||| |||
Sbjct 533 CAAGAAACAAGAAATAAGGAATATATGCAATC--TAT-T-ATTTAGGTTTTTTTTTTCTT 588
Query 593 TGCTAAGAAGACGGGAGCAAATGGCGAGGATCGCGTTAAGCATCGACTCAAGATTTGTGG 652
|||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 589 TGCTAAGAAGACGGAAGCAAATGGCGGGGATCGCGTTAAGTATCGACTCAAGATTTGTGG 648
Query 653 CTATATTAATATATCTAACAGCTTATT--AATTAACCCCTCTTTTGGGAAAtttttttCC 710
||||||||||||| ||||||| || || |||||||| ||||||||||| |||||||||
Sbjct 649 CTATATTAATATACCTAACAGTTTTTTTTAATTAACCACTCTTTTGGGATTTTTTTTTCC 708
Query 711 TTAAATATACTTTCTGTGTCTTCTTTTCTATATTTAATTCTCAAATATTTTGTATATTAG 770
|| ||||| |||| ||| |||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 709 TTCTATATATTTTCGGTGCCTTCTTTTATATATTTTATTTTCAAATATTTTGTATATTAG 768
Query 771 TTTGGGTACGTGGACGACTTTTCCCTCAAGTCAACGTTTATTGTTGACCGTTGGTTCTTG 830
||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 769 TTTGG--A--TGGAAGACTTTTCCCTCAAGTCAACGTGTATTGTTGACCGTTGGTTCTTG 824
Query 831 AGAGGAATAGCTAGTTTTTATTTGTATTGATTTTTGAATCAAGAATTTTCATTC 884
|||||||||||||||||| ||||||||| |||||| | ||||||||||||||||
Sbjct 825 AGAGGAATAGCTAGTTTT-ATTTGTATTAATTTTTTATTCAAGAATTTTCATTC 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5