BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491023
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36090.3 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 1657 0.0
> AT4G36090.3 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr4:17078311-17080749 REVERSE LENGTH=1707
Length=1707
Score = 1657 bits (897), Expect = 0.0
Identities = 1086/1179 (92%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 360 TTCTGAGGCGGCGAGTCCA-AGAATTTCTTGGGCTGATATGGGAGATGAAGATGGTTTGG 418
|||||||||||| ||| || | ||| |||||||||||||||||||| |||||||| | |
Sbjct 475 TTCTGAGGCGGCAAGTGCACA-AATGTCTTGGGCTGATATGGGAGAAGAAGATGGGCTCG 533
Query 419 AGGAAGAAGAACAGAAAGATAGTGGATTAGGTTCACAGGGCGTTGATGTGAGTTCTTTAG 478
|||| ||||| |||||||| | || |||||||||||| || |||||||||||| ||| |
Sbjct 534 AGGAGGAAGACCAGAAAGAGAATGAATTAGGTTCACATGGAGTTGATGTGAGTCCTTCCG 593
Query 479 CTGGAAACTCGATGAAGACTCCCCAGAAGCGTAAATTGTCTAGGGAAGAAAGAGAGCGTT 538
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 TTGGAGACTCGATGAAGACTCCTGAGAAGCGTAAATTGTCTAGGGAAGAAAGAGAGCGTT 653
Query 539 ATCGATTTATGAATGTGAAGAAAATGAAAGTGTTTTCTTGTTTTGAGAAAGTTAGAGGGA 598
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 654 ATCGGTTTATGAATGTGAAGAAAATGAAAGTGTTTTCTTGTTATGAGAAAGTTAGAGGGA 713
Query 599 GGTCTATTAATATTCTCGAGGGACTTGAGTTGCATACTGGTGTTTTTAGCGCGGTGGAGC 658
||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 714 GGTCTGTTAATATTCTCGAAGGACTTGAATTGCATACCGGTGTTTTTAGCGCGGTGGAGC 773
Query 659 AGAAAAAGATTGTTGATTTCGTCTATGAACTACAAGAGAAGGGTCAAAGAGGAGAATTGC 718
||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||
Sbjct 774 AGAAAAAGATTGTTGATTTTGTCTATGAACTACAAGAGAAAGGCCGTAGAGGAGAATTGC 833
Query 719 AAGACCGTACTTTTACCGCTCCGCATAAGTGGATGAGAGGCAAAGGACGAGTTACTATCC 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 834 GAGAGCGTACTTTTACCGCTCCGCATAAGTGGATGAGAGGCAAAGGACGAGTTACTATTC 893
Query 779 AATTCGGATGTTGTTATAACTATGCACCAGACAAAGCGGGAAACCCACCCGGAATCCTTC 838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 894 AATTCGGATGTTGTTATAACTATGCACCGGACAAAGCGGGAAACCCACCCGGAATCCTTC 953
Query 839 AACGCGAAGCGGTTGATCCAATACCGTCTCTTTTCAAAGTAATAATCAAAAGGTTGGTTG 898
|||| | || ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 954 AACGTGGAGATGTTGATCCAATGCCATCTATTTTCAAAGTAATAATCAAAAGGTTGGTTG 1013
Query 899 GGTGGCATGTACTTCCTCCAACTTGTGTCCCAGATAGTTGTATCGTCAATATCTATGATG 958
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1014 GGTGGCATGTACTTCCTCCAACTTGTGTACCGGATAGTTGTATCGTCAATATCTATGAGG 1073
Query 959 AAGGCGATTGCATACCTCCTCATATCGATAACCATGACTTCGTCCGCCCTTTCTGCACAG 1018
||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1074 AAGACGATTGCATACCTCCTCACATCGATAACCATGACTTCCTCCGCCCTTTCTGCACAG 1133
Query 1019 TATCATTCCTCAGTGAGTGCAATATACTCTTCGGATCAAATCTCAAAGTCGTAGGACCTG 1078
|||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1134 TATCATTCCTCAGTGAATGCAATATACTCTTTGGTTCAAATCTCAAAGTCTTAGGACCTG 1193
Query 1079 GTGAATTCTTCGGTCCATACTCTATGCCGCTTCCTGTTGGATCAGTTCTAGTGCTAAAAG 1138
||||||||| |||| | |||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 1194 GTGAATTCTCCGGTTCTTACTCTATACCGCTTCCTGTCGGATCAGTTCTAGTGCTCAA-G 1252
Query 1139 GG-AATGGAGCTGATGTCGCTAAGCATTGTGTACCTGCGGTTCCCACAAAGAGGATATCA 1197
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1253 GGTAATGGAGCTGATGTCGCTAAGCATTGTGTACCTGCCGTTCCCACAAAGAGGATATCG 1312
Query 1198 ATCACGTTTAGGAAAATGGACGAGTCGAAAAGACCAGTAGGATTCACTCCGGAACCTGAT 1257
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1313 ATCACGTTTAGGAAAATGGACGAGTCGAAAAGACCAGTCGGATTCACCCCGGAACCTGAT 1372
Query 1258 TTACAAGG-GATTAAGCCGTTGCCGTACGAGCAGACCACGCAGAGTACTCCTGCTGCTGC 1316
|| | || ||||||||||||||| ||||| || ||||||| |||||||||||||| |||
Sbjct 1373 TTGGA-GGAGATTAAGCCGTTGCCATACGAACACACCACGCCGAGTACTCCTGCTGATGC 1431
Query 1317 AGCCATTAGCTCTTCAAGATCCAGTAACGACCAAAATGGTAGTAATCACAACTATCGAAC 1376
|| ||||||||||||||||||||| | || ||||||||||||||||||||| |||||||
Sbjct 1432 AGTCATTAGCTCTTCAAGATCCAGCATTGATCAAAATGGTAGTAATCACAACAATCGAAC 1491
Query 1377 TGCACATGGAGAAGGAAGCAAGGATCGTAGGTCGAGAGATTATCGTTCTGAGAGTCGAGA 1436
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1492 TGCACATGGAGGAGGAAGCAAGTATCGTAGGTCGAGAGATTATCATTCTGAGAGTCGAGA 1551
Query 1437 GTGGTCATCATCGGGCCAACGAAGAGAAAAGTCACGGCATACTCCTAACAGGTCTTATAG 1496
| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 1552 GCGGTCATCATCGGGCCAACGAAGAGAAACTTCACGACATACTCCTAATAGGTCCTATAG 1611
Query 1497 ACCCAAGGCTACTAGCTCCGACAACGTCTGAAAATTTGT 1535
|||||||| |||||||||||||||||||||| |||||||
Sbjct 1612 ACCCAAGGTTACTAGCTCCGACAACGTCTGAGAATTTGT 1650
Score = 346 bits (187), Expect = 4e-94
Identities = 336/400 (84%), Gaps = 42/400 (11%)
Strand=Plus/Plus
Query 1 TTGTTCAATCCGTACAAACTGAAACTAAAATACGGAAACA--GAGA----GATT-TG-G- 51
|||||| |||||||||||||||||||||| |||||||||| |||| | || || |
Sbjct 11 TTGTTCGATCCGTACAAACTGAAACTAAAGTACGGAAACAGCGAGATTTGGTTTGTGCGA 70
Query 52 T------TAATGGAACCAAACTACGAAGAAGATGTTTTCCTCGGCAAGTATCAGCCATCG 105
| ||||||||||||| || || ||||||||||| |||| ||||||||| ||||
Sbjct 71 TAGAAGATAATGGAACCAAATTATGAGGAAGATGTTTTTCTCGCCAAGTATCAATCATCC 130
Query 106 GAACTTAAGATTGCTTCTGAATTTCTTACGACTTGGTTGCCTTTCTTATCTAGAGATCTC 165
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 131 GAACTTAAGATTGCTTCTGAATTTCTTACGAATTGGTTGCCTTTCTTATCTAGAGATCTC 190
Query 166 TGCAACGACTGTGTTCATGTTCTCTCCGATCGAATCCGTTCTCTAGACCCAGAGAAG-GT 224
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 191 TGCAACGACTGTGCTCATGTTCTCTCCGATCGAATCCGTTCTCTAGACCCAGAGCATTGT 250
Query 225 --TAATGGAGAAGATAAAGCGGGTTCGGGTTCAATGGTGGAGAACATGGAATCTGAAGA- 281
||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 251 AGTAATGGAGAAGTTAAAGCGGGTTCTGGTTCAATGGTGGATAACATGGAATCTGAAGAA 310
Query 282 -TT--T----TG-A-T---AA----T--A-A----GATGGACGATATTTATGACGGGAAG 318
|| | || | | || | | | ||||||| |||||||||||||||||
Sbjct 311 GTTGATAACATGGAATCTGAAGAAGTTGATAACAAGATGGACAATATTTATGACGGGAAG 370
Query 319 TTTTGTGATTCTCACTCATTAGATAGTTTGAAAGCCGGGG 358
|| |||| ||||||||||||||||||||||||||| ||||
Sbjct 371 TTGTGTGTTTCTCACTCATTAGATAGTTTGAAAGCTGGGG 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5