BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491027
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) D... 1308 0.0
> AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17055393-17056704 FORWARD
LENGTH=1002
Length=1002
Score = 1308 bits (708), Expect = 0.0
Identities = 844/907 (93%), Gaps = 19/907 (2%)
Strand=Plus/Plus
Query 221 GAGCTGAGATGGTGGTGGAAGTGAAGAAGGAAGCAGTTTGTTCCCGGAAAGCAGAGAGAG 280
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 102 GAGCTGAGATGGTGGTGGAAGTGAAGAAGGAAGCAGTTTGTTCCCAGAAAGCAGAGCGAG 161
Query 281 AGAAGCTTCGTAGAGATAAGCTCAAGGAGCAGTTTCTTGAGCTTGGAAAGGCACTAGATC 340
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct 162 AGAAGCTTCGTAGAGATAAGCTTAAGGAACAGTTTCTTGAGCTTGGAAATGCACTTGATC 221
Query 341 CAAATAGGCCTAAGAGTGACAAAGTTTCAGTTCTCACTGATACAATACAAATGCTGAAGG 400
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 222 CGAATAGGCCTAAGAGTGACAAAGCCTCAGTTCTCACTGATACAATACAAATGCTCAAGG 281
Query 401 ATGTAATGAACCAAGTTGATAGACTAAAAGCTGAGTATGCAACACTCTCTCAAGAGTCTC 460
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 282 ATGTAATGAACCAAGTTGATAGACTAAAAGCTGAGTATGAAACACTATCTCAAGAGTCTC 341
Query 461 GTGAGCTAATTCAAGAGAAGAGTGAGCTGAGAGAGGAAAAAGCGACTTTAAAGTCCGATA 520
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 342 GTGAGCTAATTCAAGAGAAGAGTGAGCTGAGAGAGGAGAAAGCGACTTTAAAGTCTGATA 401
Query 521 TCGAGATTCTTAATGCTCAATATCAGCATAGAATCAGAAA-TATGGTCCCATGGATACCT 579
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 402 TCGAGATTCTTAATGCTCAATATCAGCATAGAATCA-AAACCATGGTTCCATGGGTACCT 460
Query 580 CATTACACTTATCCTATTCCCC-TAGTAGCAATAACTCAGGGTCAGTCCAGTTTT-TCAC 637
||||||| ||||| || ||||| | ||||| |||||||||||||||||||||||| | ||
Sbjct 461 CATTACAGTTATCATA-TCCCCTTCGTAGCCATAACTCAGGGTCAGTCCAGTTTTAT-AC 518
Query 638 CTTATTCAGCCTCGGTCAATCCTCTAATCAG-ACAACAAGCATCGGTTCAGCAACATTCT 696
||||||||||||| ||||||||||||| | | ||||||||||||||||||||| ||||||
Sbjct 519 CTTATTCAGCCTCTGTCAATCCTCTAA-CCGAACAACAAGCATCGGTTCAGCAGCATTCT 577
Query 697 TCTTC-T-T-CCGATGCTTCAATCAAACAAGATTTCAAAATCAAGCCTTTAGATTTGGAT 753
||||| | | ||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct 578 TCTTCTTCTGCCGATGCTTCAATGAAACAAGATTCCAAAATCAAGCCGTTAGATTTGGAT 637
Query 754 CTGATGAGGAACAGTAACCATTCAGGTCAAGGAAATGATCATAAAGATGATGTTGGTTTA 813
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 638 CTGATGATGAACAGTAACCATTCAGGTCAAGGAAATGATCAAAAAGATGATGTTCGTTTA 697
Query 814 GAGCTTGAGCTTAAAATCCATGCCTCTTCTTTAGCTCAACAGGATGTTTCTGGAAAAGAG 873
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AAGCTCGAGCTTAAAATCCATGCCTCTTCTTTAGCTCAACAGGATGTTTCTGGAAAAGAG 757
Query 874 AAGAAAGGAAGCTTGACAACCACTGCAAGCTCATCGAATAGTTACTCATCATCTCAAGCT 933
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 758 AAGAAAGTAAGCTTGACAACCACTGCAAGCTCATCGAATAGTTACTCATTATCTCAAGCT 817
Query 934 GTTCAAGATAGTTCCCCGGGTACCCTAAATGACATTTTGAAGTCATAAACTGATAAACAT 993
||||||||||||||||| |||||| |||||||||| |||||| ||||||| ||||||||
Sbjct 818 GTTCAAGATAGTTCCCCCGGTACCGTAAATGACATGTTGAAGCCATAAACCAATAAACAT 877
Query 994 ATTCCCCT-AAGCCTTGTGTTTAATACCATGATTGAGAAAGGTACCCA-GATACTAAACT 1051
|||||||| || | |||||||||||||| |||||||||| |||||| | ||| ||||||
Sbjct 878 ATTCCCCTGAA-C-TTGTGTTTAATACCGTGATTGAGAA-GGTACC-ATGAT--TAAACT 931
Query 1052 TGTTGTAGATTATCCCCATGATTAACTATGTATTATTATCACAAGCAAATAAAACACAAA 1111
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 932 TGTTGTAGATTATCCACATGATTAACGATGTATTCTTATCACAAGCAAATAAAACACAAA 991
Query 1112 AGCATTT 1118
|||||||
Sbjct 992 AGCATTT 998
Score = 82.4 bits (44), Expect = 9e-15
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 89 AAAAA-TTGCTCTGAATCCGATTTTGCTGATGATTCCTCTGCTTCTTCTTC 138
||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 25 AAAAACTTGCTCTGAATCTGATTTTGCTGATGATTCCTCTGCTTCTTCTTC 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5