BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491028
Length=2168
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36050.2 | Symbols: | endonuclease/exonuclease/phosphatase ... 3153 0.0
AT4G36052.1 | Symbols: | other RNA | chr4:17052347-17053499 FO... 715 0.0
> AT4G36050.2 | Symbols: | endonuclease/exonuclease/phosphatase
family protein | chr4:17051982-17055059 REVERSE LENGTH=2189
Length=2189
Score = 3153 bits (1707), Expect = 0.0
Identities = 2046/2203 (93%), Gaps = 50/2203 (2%)
Strand=Plus/Plus
Query 1 GGAAGAAGGAGAAGATGAAGATAGTGACTTACAACGTTAATGGCCTTAGGCAACGAGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GGAAGAAGGAGAAGATGAAGATAGTGACTTACAACGTTAATGGCCTTAGGCAACGAGTTT 61
Query 61 CGCAGTTTGAATCTCTTCTCAAACTTCTCGATTCGTTCGACGCTGATATTATCTGCTTTC 120
|||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct 62 CGCAGTTTGATTCTCTTCTCAAACTTCTCGATTCGTTCGACGCCGATATCATTTGCTTCC 121
Query 121 AGGAGACGAAACTGAGAAGGCAGGAATTGACAGCGGATTTGGCAATAGCTGATGGGTATG 180
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 122 AGGAGACGAAACTGAGAAGGCAAGAATTGACAGCAGATTTGGCGATAGCTGATGGGTATG 181
Query 181 AATCGTTTTTCTCGTGCACTCGCACTTGTGAGAAAGGTCGTACTGGTTATTCTGGTGTAG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 AATCGTTTTTCTCGTGCACTCGCACTAGTGAGAAAGGTCGTACTGGTTATTCTGGTGTAG 241
Query 241 CAACGTTTTGTAGGGTAAAGTCAGCATCTTCAAGCTGTGAAATTGCTTTGCCTGTTGCTG 300
|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 242 CAACGTTTTGCAGGGTGAAGTCAGCATCTTCAAGCTGTGAAACTGCTTTGCCTGTTACTG 301
Query 301 CAGAAGAAGGCGTCACGGGTCTTGTAAACAGTAATTCACGAGGTGGGAAGAATGAAATGT 360
||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 302 CAGAAGAAGGCATCACTGGTCTTGTAAACAGTAATTCACGAGGTGGGAAGAGTGAAACGT 361
Query 361 CTGCAGTAGGTGAAGGTCTTGAGGAATATGAAAAAGAAGAGCTTCTTAGGATTGACCAAG 420
|| |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 362 CTACAGTAGCTGAAGGTCTTGAGGAATATGAGAAAGAAGAGCTTCTTATGATTGACCAAG 421
Query 421 AAGGACGGTGTGTTATAACTGATCACGGCCACTTTGTTGTTTTCAATGTTTATGGGCCGC 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AAGGACGATGTGTTATAACTGATCACGGCCACTTTGTTGTTTTCAATGTTTATGGGCCGC 481
Query 481 GAGCTGTAGCTGATGATGCTGATAGAATCGAGTTTAAGCATCGGTTCTATGATATTTTAG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 482 GAGCTGTAGCTGATGATGCTGATAGGATCGAGTTTAAGCATCGGTTCTATGGTGTTTTAG 541
Query 541 AGAGAAGATGGGAGTGTCTTCTGCGTCAGGGAAGGAAGGTATTTGTTGTTGGGGATCTCA 600
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 542 AGAGAAGATGGGAGTGTCTTCTGCGTCAAGGAAGGAGGGTATTTGTTGTTGGGGATCTCA 601
Query 601 ACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTCGAGAAAAACGAGT 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 602 ACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTTGAGAAAAACGAGT 661
Query 661 TCAGGAAGTGGTTTAGATCTCTGCTAGTTGAACGTGGAGGCTCATTCTCTGATGTCTTCA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 662 TCAGGAAATGGTTTAGATCTCTGCTAGTTGAACGTGGAGGCTCATTCTCTGATGTTTTCA 721
Query 721 GATCAAAACATCCTGAAAGGAAAGATTCATTCACATGTTGGTCCTCAAGTACTGGAGCAG 780
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 722 GATCAAAACATCCTGAAAGGAAAGATGCATTCACATGTTGGTCCTCAAGTAGTGGAGCAG 781
Query 781 AAAAATTTAACTACGGTTCGAGGATTGATCATATCTTAGTTGCTGGATCATGCTTGCATC 840
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 782 AACAATTTAACTACGGTTCGAGGATTGATCATATCTTAGTTGCTGGGTCATGCTTGCATC 841
Query 841 AGGAAGAAGATAAGCAGGGCCATAGTTTTCTTGCTTGCCATGTCAAGGAATGTGACATAT 900
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGGACGAAGATAAGCAGGGGCATAGTTTTCTTGCTTGCCATGTCAAGGAATGTGACATAT 901
Query 901 TAACAGAGTATAAGCGGTTTAAGGATGAAAATATGCCAACAAGGTGGAAAGGTGGATTGG 960
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 902 TAACAGAGTATAAGCGTTTTAAGAATGAAAATATGCCAACAAGGTGGAAAGGTGGATTGG 961
Query 961 GTACAAAACTAAAGGGATCAGACCACGTACCTGTATTCACTAGTTTTGATGATTTACCAG 1020
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 962 TTACAAAATTTAAGGGATCAGACCACGTACCTGTATTCATTAGTTTTGATGATTTACCAG 1021
Query 1021 ACATCCCCGAACACAGCACGCCACCATTAGCTTCGAGATATCTTCCCATGATTTACGGTT 1080
||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1022 ACATCCCGGAACACAGCACGCCGCCATTAGCGTCAAGATATCTTCCCATGATTTACGGTT 1081
Query 1081 TCCAGCAAACTCTTGTATCGGTATTTATGAAGAAGCGGGCCAATGAAGAAGCCAAAGCCA 1140
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1082 TCCAACAAACTCTTGTATCGGTATTTAAGAAGAGGCGGGCCAATGAAGAAGCCAAAGCCA 1141
Query 1141 TTGAGGTATCATGTTCATCATCGAGTCAAAGTAGTGCTTCATCAAGTTGTGGGGATATTT 1200
||||||| |||||||||||||| | |||||||| | ||||||||| ||||||||||||||
Sbjct 1142 TTGAGGTGTCATGTTCATCATCAACTCAAAGTAATACTTCATCAATTTGTGGGGATATTT 1201
Query 1201 CTACAGGACCACTGAGAAACTGTGTTTCAATGGGAATTTCACTTGAGAAATCTTGTTCGT 1260
||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1202 CTACAGGACCACTGAGAAATTGTGGTTCGATGGGAATTTCACTTGAGAAATCTTGTTCTT 1261
Query 1261 TTGAGAATGAATCCACTTGTGCCTTTACAGAAGCAGAAACGGTGGCATCAACAGGTTCCA 1320
||||||| ||||||||| | | ||||||||||||||||||||||| ||||||||||||
Sbjct 1262 TTGAGAACAAATCCACTTCCGGCGTTACAGAAGCAGAAACGGTGGCAGCAACAGGTTCCA 1321
Query 1321 TTGATAACACTT-GTGATGGAATTCGTGTATCATCAGGTAGAGCTGTGAATATCTCTAGA 1379
|||||||| ||| |||||||||| |||| |||||||| ||||||| ||||||||||||||
Sbjct 1322 TTGATAAC-CTTAGTGATGGAATACGTGCATCATCAGTTAGAGCTTTGAATATCTCTAGA 1380
Query 1380 GATGGAGACAGGAAAAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAATCCTTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1381 GATGGAGACAGGAAAAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAGTCCTTT 1440
Query 1440 TTCACTACAAACTCAAAGGTTAAGAATGGCGGGGATAGTTCTTCTTCCTATGTTTCCTCC 1499
||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||
Sbjct 1441 TTCACTACAAACTCAAAAGTAAACAATGTCGAGGATAGTTCTTCTTCCTATGTTTCCTCC 1500
Query 1500 AGTCCCAGCTCCCAAGCCGAAAGTATCACAGAACCGAATGTTTCCA-GCAAAGAAGACGG 1558
|||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |
Sbjct 1501 AGTCCCAGCTCCCAAGTAGAAAGCATCACAGAACCGAATGTTT-CAGGCAAAGAAGACAG 1559
Query 1559 CGAACCGACTACTTCAACACAGGAACAGGATCGAAGTGGTTCTTCTGCTAAACAAAAGAA 1618
||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 1560 TGAACCGACTACTTCAACACAGGAACAGGATCAAACAGGTTCTTCAGCTAAACAAAAAAA 1619
Query 1619 CAACGCAGCTTTAATGGAGTGGCAAAGAATACAAAACCTAATGCAAAACAGCATACCTCT 1678
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1620 CGATGCAGCTTTAATGGAGTGGCAAAGAATACAGAACCTAATGCAAAACAGCATACCTCT 1679
Query 1679 CTGCAAAGGACATAAAGAAGCTTGTGTTGCTCGGGTCGTAAAGAAACCAGGTCCCACATT 1738
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1680 CTGCAAAGGACATAAAGAAGCTTGTGTTGCTAGGGTCGTCAAGAAACCAGGTCCCACATT 1739
Query 1739 TGGACGCAGATTCTACGTCTGCTCTCGAGCTGAGAAGCAAACTGTGGTTATTTCAAATGG 1798
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CGGACGCAGATTCTACGTCTGCTCTCGAGCTGAGAAGCAAACTGTGGTTATTTCAAATGG 1799
Query 1799 GCTTCATCAAAATTCAGAGACAAGTAAAAGAGTGATGAGATTGAGATCAACCATGATTGA 1858
||||||||||||||||||||||||||||||||||||||||| | | || |||| |
Sbjct 1800 GCTTCATCAAAATTCAGAGACAAGTAAAAGAGTGATGAGATC-A-A--AA---TGATA-A 1851
Query 1859 GTATTGAGGAACCAAGGATTTTAATCTAGTGAGCTCAGGTACACCGTAGAAACTCGACAA 1918
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GTATTGAGGAACGAAGGATTTTAATCTAGTGAGCTCAGGTACACCGTAGAAACTCGACAA 1911
Query 1919 TGTCGGTATATAGTTAATGTTATCTTAATCTCTAAGAGT-TTGGACTCT-TGACCAATGT 1976
||||||||| ||||||||||| |||||||||||||||| ||| || | || | |||||
Sbjct 1912 TGTCGGTATGTAGTTAATGTTGTCTTAATCTCTAAGAGACTTG-AC-CAATGGC-AATGT 1968
Query 1977 GTAAAGTTGCTGGATGAAGCTTCTTTCCACGTTCC---GT-TGTAT-A----AT------ 2021
||||||||||||||| ||| ||||||||||||||| || | ||| | ||
Sbjct 1969 GTAAAGTTGCTGGATCAAGGTTCTTTCCACGTTCCAACGTCTCTATCAGTTTATCCCTCT 2028
Query 2022 --GT---AT--TGT-TTCTT-CT--AA-TGTGATTAACCTTTTAGCTTTATAGCAGCTAA 2069
|| || ||| || || || || |||||||||| |||||||||||||||||||||
Sbjct 2029 TTGTTTTATAATGTATTGTTTCTTCAAATGTGATTAAC-TTTTAGCTTTATAGCAGCTAA 2087
Query 2070 TATACTAAAT-TTACAAGTTGCAG-GAA-TCTGATTATATAAGGTTATGTTGATTCACAT 2126
|||||||| | ||||||||||||| ||| | |||||||||||||||||||| ||||||||
Sbjct 2088 TATACTAA-TGTTACAAGTTGCAGAGAAATTTGATTATATAAGGTTATGTTAATTCACAT 2146
Query 2127 GGATACGTATACGTATACGTA-TGTGTGTGTATGGAATTATGT 2168
||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2147 GGATACGTATACGTATACGTAATCTGTGTGTATGGAATTATGT 2189
> AT4G36052.1 | Symbols: | other RNA | chr4:17052347-17053499
FORWARD LENGTH=1084
Length=1084
Score = 715 bits (387), Expect = 0.0
Identities = 473/515 (92%), Gaps = 4/515 (1%)
Strand=Plus/Minus
Query 1095 GTATCGGTATTTATGAAGAAGCGGGCCAATGAAGAAGCCAAAGCCATTGAGGTATCATGT 1154
||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 749 GTATCGGTATTTAAGAAGAGGCGGGCCAATGAAGAAGCCAAAGCCATTGAGGTGTCATGT 690
Query 1155 TCATCATCGAGTCAAAGTAGTGCTTCATCAAGTTGTGGGGATATTTCTACAGGACCACTG 1214
|||||||| | |||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 689 TCATCATCAACTCAAAGTAATACTTCATCAATTTGTGGGGATATTTCTACAGGACCACTG 630
Query 1215 AGAAACTGTGTTTCAATGGGAATTTCACTTGAGAAATCTTGTTCGTTTGAGAATGAATCC 1274
||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 629 AGAAATTGTGGTTCGATGGGAATTTCACTTGAGAAATCTTGTTCTTTTGAGAACAAATCC 570
Query 1275 ACTTGTGCCTTTACAGAAGCAGAAACGGTGGCATCAACAGGTTCCATTGATAACACTT-G 1333
|||| | | ||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 569 ACTTCCGGCGTTACAGAAGCAGAAACGGTGGCAGCAACAGGTTCCATTGATAAC-CTTAG 511
Query 1334 TGATGGAATTCGTGTATCATCAGGTAGAGCTGTGAATATCTCTAGAGATGGAGACAGGAA 1393
||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 510 TGATGGAATACGTGCATCATCAGTTAGAGCTTTGAATATCTCTAGAGATGGAGACAGGAA 451
Query 1394 AAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAATCCTTTTTCACTACAAACTC 1453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 450 AAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAGTCCTTTTTCACTACAAACTC 391
Query 1454 AAAGGTTAAGAATGGCGGGGATAGTTCTTCTTCCTATGTTTCCTCCAGTCCCAGCTCCCA 1513
||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AAAAGTAAACAATGTCGAGGATAGTTCTTCTTCCTATGTTTCCTCCAGTCCCAGCTCCCA 331
Query 1514 AGCCGAAAGTATCACAGAACCGAATGTTTCCAG-CAAAGAAGACGGCGAACCGACTACTT 1572
|| ||||| |||||||||||||||||||| || |||||||||| | |||||||||||||
Sbjct 330 AGTAGAAAGCATCACAGAACCGAATGTTTC-AGGCAAAGAAGACAGTGAACCGACTACTT 272
Query 1573 CAACACAGGAACAGGATCGAAGTGGTTCTTCTGCT 1607
|||||||||||||||||| || |||||||| |||
Sbjct 271 CAACACAGGAACAGGATCAAACAGGTTCTTCAGCT 237
Score = 235 bits (127), Expect = 1e-60
Identities = 145/154 (94%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 942 AGGTGGAAAGGTGGATTGGGTACAAAACTAAAGGGATCAGACCACGTACCTGTATTCACT 1001
||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
Sbjct 1015 AGGTGGAAAGGTGGATTGGTTACAAAATTTAAGGGATCAGACCACGTACCTGTATTCATT 956
Query 1002 AGTTTTGATGATTTACCAGACATCCCCGAACACAGCACGCCACCATTAGCTTCGAGATAT 1061
|||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 955 AGTTTTGATGATTTACCAGACATCCCGGAACACAGCACGCCGCCATTAGCGTCAAGATAT 896
Query 1062 CTTCCCATGATTTACGGTTTCCAGCAAACTCTTG 1095
||||||||||||||||||||||| ||||||||||
Sbjct 895 CTTCCCATGATTTACGGTTTCCAACAAACTCTTG 862
Score = 165 bits (89), Expect = 2e-39
Identities = 95/98 (97%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 1675 CTCTCTGCAAAGGACATAAAGAAGCTTGTGTTGCTCGGGTCGTAAAGAAACCAGGTCCCA 1734
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 238 CTCTCTGCAAAGGACATAAAGAAGCTTGTGTTGCTAGGGTCGTCAAGAAACCAGGTCCCA 179
Query 1735 CATTTGGACGCAGATTCTACGTCTGCTCTCGAGCTGAG 1772
|||| |||||||||||||||||||||||||||||||||
Sbjct 178 CATTCGGACGCAGATTCTACGTCTGCTCTCGAGCTGAG 141
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 1771 AGAAGCAAACTGTGGTTATTTCAAATGGGCTTCATCAAAATTCAGAGACAAGT 1823
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AGAAGCAAACTGTGGTTATTTCAAATGGGCTTCATCAAAATTCAGAGACAAGT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107529567390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5