BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491040
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:170... 1511 0.0
> AT4G35970.1 | Symbols: APX5 | ascorbate peroxidase 5 | chr4:17028606-17030293
FORWARD LENGTH=973
Length=973
Score = 1511 bits (818), Expect = 0.0
Identities = 931/984 (95%), Gaps = 14/984 (1%)
Strand=Plus/Plus
Query 1 ATTCATTGATCTGAGTTATTTTACTTGCTCTTTCAAAGCT-TGACAATGGCAGTGAACAT 59
|||||| | ||||||||||||| |||||||||| ||| | ||||||||||||||||| |
Sbjct 1 ATTCATCGGTCTGAGTTATTTTGCTTGCTCTTTGAAA-TTCTGACAATGGCAGTGAACGT 59
Query 60 TGATGCAGAGTACCTCAAAGAGATAGAGAAGACTCGTAGAGACCTTTGAGCTCTCATCTC 119
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 60 TGATGCAGAGTACCTCAAAGAGATAGAGAAAACTCGTAGAGACCTTCGAGCTCTCATCTC 119
Query 120 TTCCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGA 179
Query 180 TGCCAAGAAGAAAACCGGAGGTCCCAATGGATCAATCAGGTTCAAGGAAGAGCTAACCCG 239
|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||
Sbjct 180 TGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATCAGATTCAAGGAAGAGCTAAACCG 239
Query 240 TCCACACAACAAGGGTTTGGAGAAGGCAGTCGCTTTTTGCGAGGAAGTAAAGGCTAAGCA 299
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 240 TCCACACAACAAAGGTTTGGAGAAGGCAGTCGCCTTCTGCGAGGAAGTAAAGGCTAAGCA 299
Query 300 TCCGC-GAGTCTCTTACGCAGACCTCTATCAGCTCGCTGGAGTTGTTGCAGTGGAGGTTA 358
||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TCC-CAGAGTCTCTTACGCAGACCTTTATCAGCTCGCTGGAGTTGTTGCAGTGGAGGTTA 358
Query 359 CTGGCGGCCCTGCAATCCCATTTACACCAGGCCGTAAGGATGCTGATTCCCCGGACGACG 418
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 359 CTGGCGGCCCTGCAATCCCATTTACACCAGGCCGTAAGGATGCTGATTCCGCGGACGATG 418
Query 419 GAGAACTTCCAAATCCAAATGAAGGTGCCTCACATTTAAGAACTCTCTTCTCTCGTATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGAACTTCCAAATCCAAATGAAGGTGCCTCACATTTAAGAACTCTCTTCTCTCGTATGG 478
Query 479 GTCTATCGGATAGAGACATTGTGGCTCTCTCTGGAGGTCACACTTTGGGGCGTGCACATA 538
|||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 GTCTATTGGATAGAGACATTGTAGCTCTCTCTGGAGGTCACACTTTGGGACGTGCACATA 538
Query 539 AGGAGAGGTCAGATTTCGAAGGTCCTTGGACACAAGATCCTCTCAAGTTTGATAACTCAT 598
||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 AGGAGAGATCAGATTTTGAAGGTCCTTGGACACAGGACCCTCTCAAGTTTGATAACTCGT 598
Query 599 ATTTCGTAGAGCTTCTAAAAGGGGAGACTCCTGGATTGCTACAACTGAAAACCGACAAGG 658
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 599 ATTTCGTAGAGCTTCTAAAAGGGGAGACTCCGGGATTGCTACAACTTAAAACCGACAAGG 658
Query 659 CTCTACTTGATGATCCAAAGTTCCACCCTTTTGTTAAGCTTTATGCAAAGGACGAGGATA 718
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 CTCTACTTGATGATCCCAAGTTCCACCCTTTTGTTAAGCTGTATGCAAAGGACGAGGATA 718
Query 719 TGTTCTTCAAAGCCTATGCAATTTCACACAAGAAACTCTCAGAACTAGGATTTAATCCGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTTCTTCAAAGCCTATGCAATTTCACACAAGAAACTCTCAGAACTAGGATTTAATCCGC 778
Query 779 CAAGAAGAATTCCTTCAGCAGTGACGGAGCAGACGCTTGGAATCGCTGTTGCTGCAGCTG 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 CAAGAAGAATTCCTTCAGCAGTGACGCAGCAGACGCTTGGAATCGCTGTTGCTGCAGCTG 838
Query 839 TGGTGATCTTTACCATATGCTACGAAGCAAGCAGAAGAGGCAAGTGAGGAGGTTTTACAG 898
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 839 TGGTGATCTTTACAATATGCTATGAAGCAAGCAGAAGAGGCAAGTGAGGAAGTTTCGCAG 898
Query 899 ATGCG-TAAAGGGACAAGAGAAAAATTTTCAAATGTTAATTGAATGTATGCAATAAATAG 957
|||| ||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 899 ATGCAATAA-GGGACGAGAGAAAAAT--------GTTAATTGAATGTATGCAATAAATAC 949
Query 958 AAAGATTCATGCAATGTTACCTCC 981
||||||||||||||||||||||||
Sbjct 950 AAAGATTCATGCAATGTTACCTCC 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5