BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491041
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6 ... 1090 0.0
AT2G17800.1 | Symbols: ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | Ara... 813 0.0
AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-... 431 7e-120
> AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6
| RAC-like 6 | chr4:17023837-17025863 REVERSE LENGTH=1157
Length=1157
Score = 1090 bits (590), Expect = 0.0
Identities = 756/830 (91%), Gaps = 36/830 (4%)
Strand=Plus/Plus
Query 230 GAAGAAGAAGAGGTGGAGGCAATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGT 289
||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 329 GAAGAAGAAGAAGAAGAGGCAATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGT 388
Query 290 GATGGAGCTGTTGGTAAAACCTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACG 349
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 389 GATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACG 448
Query 350 GATTATGTTCCCACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACC 409
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACG 508
Query 410 GTGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTG 568
Query 470 AGTTACCGCGGTGCCGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTAT 529
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGTTACCGTGGTGCTGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTAT 628
Query 530 GAGAATGTTTCCAAGAAGTGGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATT 589
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 629 GAGAATGTTTCCAAGAAGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATT 688
Query 590 GTCCTCGTTGGAACCAAACTTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCT 649
||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 689 GTCCTTGTTGGAACCAAACTAGATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCT 748
Query 650 GGTGCTGTCCCTATTACCACTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCT 709
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 749 GGTGCTGTCCCTATTACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCCA 808
Query 710 GCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCG 868
Query 770 ATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCC 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCC 928
Query 830 TGCTCCATTTTGTAATAGCTCTCATG-----CAAG---C------AG--G-G--TG---G 867
|||||||| |||||||||| |||||| |||| | || | | || |
Sbjct 929 TGCTCCATCTTGTAATAGCACTCATGGAAGTCAAGAAGCTCTTTGAGATGAGGATGACAG 988
Query 868 --T--TTTAAGAA-GTATTGGATTTTCATTTTTCTTGTT-TT--CCGTATTCATT-GTGA 918
| ||||| || |||| | ||||||||||| ||||| || |||| |||||| ||||
Sbjct 989 GGTGGTTTAAAAAAGTATCGCTTTTTCATTTTTGTTGTTGTTTTCCGTTTTCATTTGTGA 1048
Query 919 TCTCTTAGTATCT-TA-AAAACGAATTGTGTGGTTAATTCAACTTCTATTTTCACTGATA 976
||||||||| || || ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1049 TCTCTTAGT-TCCGTACAAAACGAATTGTGAGGTTAATTCAACTTCTATTTTAACTGATA 1107
Query 977 GCCGAGAGAGCTAATGTTTAGTCATTTACAAATGTTTTATCAATTATGAT 1026
||||||| |||| ||| |||| |||||||||||||||||||||| ||||
Sbjct 1108 GCCGAGAAAGCT--TGTCTAGTTATTTACAAATGTTTTATCAATTGTGAT 1155
Score = 165 bits (89), Expect = 8e-40
Identities = 108/116 (93%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 115 ATATCTAGGGTTTTGAGATGGTTGTTAATTGAAAGATAAATGGTGGAAGATTCGGAGGAA 174
||||||||||||||||||| | |||||||||||||| |||||| |||| ||||||||||
Sbjct 179 ATATCTAGGGTTTTGAGAT-G--GTTAATTGAAAGAT-AATGGTCGAAGTTTCGGAGGAA 234
Query 175 TTGGCTTCACATTGTGGGTGTTTCTGGGCT-CCTCAGGTTTAAATCTGAGGTTGAT 229
||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 235 TTGGCTTCACATTGTGGGTGTTTCTGG-CTTCCTCAGGTTTAAATCTGAGGTTGAT 289
> AT2G17800.1 | Symbols: ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | Arabidopsis
RAC-like 1 | chr2:7739856-7742156 FORWARD LENGTH=1265
Length=1265
Score = 813 bits (440), Expect = 0.0
Identities = 546/598 (91%), Gaps = 4/598 (1%)
Strand=Plus/Plus
Query 250 AATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC 309
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 457 AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAAC 516
Query 310 CTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTTT 369
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 517 CTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTT 576
Query 370 CGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACCGTGAATCTTGGATTGTGGGA 429
|||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 577 CGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGA 636
Query 430 TACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCGATGT 489
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 637 TACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGT 696
Query 490 TTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGT 548
|||||| ||| || |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 697 TTTCAT-CTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGT 755
Query 549 GGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTCGTTGGAACCAAAC 608
||||||||||| ||||||| ||||| ||||||||||| || || || |||||||||||||
Sbjct 756 GGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAAC 815
Query 609 TTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCTATTACCA 668
| ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| |
Sbjct 816 TAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTA 875
Query 669 CTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGAGTGCAGTT 728
|||||||||||||||| || ||||| ||||||||||| || || ||||||||||||||||
Sbjct 876 CTGCTCAGGGAGAGGAACTGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTT 935
Query 729 CAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAAC 788
||||| |||||||||||||||| || || ||||||||||||||| ||||||| |||||||
Sbjct 936 CAAAAACACAAGAGAACGTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTCTTCAAC 995
Query 789 CTCCAAAGCAGAAGAAAAAGAAGAA-CAAAGCACAAAAGGCCTGCTCCATTTTGTAAT 845
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct 996 CTCCAAAGCAGAAGAAAAAGAA-AAGCAAAGCACAAAAAGCCTGCTCCATTTTGTAAT 1052
> AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-like
3 | chr4:16672935-16674771 FORWARD LENGTH=1069
Length=1069
Score = 431 bits (233), Expect = 7e-120
Identities = 465/575 (81%), Gaps = 24/575 (4%)
Strand=Plus/Plus
Query 251 ATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGTGATGGAGCTGTTGGTAAA-AC 309
||||| ||||||||||| || ||||||||||| || || || || |||||||| ||| ||
Sbjct 242 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGG-AAAGAC 300
Query 310 CTGT-TTGCTGATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTTCCCACTGTTT 368
||| || || ||||||||||| ||||||||||| |||||||||||||| || ||||| |
Sbjct 301 TTGTCTT-CTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGT 359
Query 369 TCGATAACTTT-AGTGCAAATGTGGTTGTTAATGG-AGCCACCGTGAATCTT-GGATTGT 425
||||||| ||| ||||| |||||| ||||| |||| | ||| | || ||| |||||||
Sbjct 360 TCGATAA-TTTCAGTGCCAATGTGATTGTTGATGGCA-ACACTATCAA-CTTGGGATTGT 416
Query 426 GGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCCG 485
||||||||||||||||||||||||| || ||| ||||||||||||| || |||||||| |
Sbjct 417 GGGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAG 476
Query 486 ATGTTTTCATT-CTTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAG 544
|||| ||| || ||||| ||||| || | || || ||||| ||||| |||||||| ||
Sbjct 477 ATGTCTTC-TTACTTGCATTCTCACTTGTCAGCAAAGCTAGCTATGAAAATGTTTCTAAA 535
Query 545 AAGTGGATCCCAGAGTTGA-AGCACTATGCTCCTGGTGT-CCCAATTGTCCTCGTTGGAA 602
|||||| | || || ||| | || |||||||||||||| |||| | ||||||||||||
Sbjct 536 AAGTGGGTTCCTGAACTGAGA-CATTATGCTCCTGGTGTTCCCA-TCATCCTCGTTGGAA 593
Query 603 CCAAA-CTTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCTGGTGCTGTCCCT 661
| ||| ||||||||||| ||||| || || ||||| ||| || ||||||||||| |||
Sbjct 594 C-AAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCT 652
Query 662 AT-TACCACTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCTGCTTACATCGA 720
|| | | || |||||||| || || || |||||||| ||||| || |||||||| |||||
Sbjct 653 ATCT-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCGCCTGCTTATATCGA 711
Query 721 GTGCAGTTCAAAATCACAAGAGAACGTGAAGGGC-GTGTTTGATGCAGCGATCAGAG-TG 778
|||||| ||||| | ||| |||| ||||| | | ||||||||||| || |||| || |
Sbjct 712 ATGCAGTGCAAAAACTCAACAGAATGTGAAAG-CAGTGTTTGATGCGGCTATCA-AGGTC 769
Query 779 GTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAA 813
|| || || || ||||| | ||||| ||||||||
Sbjct 770 GTTCTCCAGCCACCAAAAAACAAGAAGAAGAAGAA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5