BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491042
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1264 0.0
> AT4G35940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G17787.1);
Has 45288 Blast hits to 24095 proteins in 1140 species: Archae
- 93; Bacteria - 2895; Metazoa - 13424; Fungi - 2873; Plants
- 1183; Viruses - 123; Other Eukaryotes - 24697 (source:
NCBI BLink). | chr4:17021672-17023764 FORWARD LENGTH=1527
Length=1527
Score = 1264 bits (684), Expect = 0.0
Identities = 796/848 (94%), Gaps = 15/848 (2%)
Strand=Plus/Plus
Query 390 GAAGCAGAAGGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACCAGAAGCAGAA 449
||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 687 GAAGCGGATTGAGAAGCAGCAGCCTCTCAATGGTAGACATAACAACAAGGAGAAGCAGAA 746
Query 450 GGAGAAACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGACTCTGAAAGCATCAT 509
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 747 AGAGAAACAGCAGCCTCTCGATGTTAGACAT---AACAACAACGACTCTGAAAGCATCAT 803
Query 510 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 863
Query 570 TCAAGAAAAACCAGGTCCTTCCCGGGGAATAAAGTTTGATTCGTCCCAGGTTGCTACTAG 629
||||||||||||||||||||| |||||||||||||| || |||||||| || |||||||
Sbjct 864 TCAAGAAAAACCAGGTCCTTCTCGGGGAATAAAGTTAGACTCGTCCCAACTTCCTACTAG 923
Query 630 AGAGCCTGTTAATCAACATCCTTGTTCCACTTCTGCACCAGAACATGTCT-CAAAGCCAC 688
|||||| |||||||||||||||||||||||||||||| ||||||||| || | |||||||
Sbjct 924 AGAGCCGGTTAATCAACATCCTTGTTCCACTTCTGCAGCAGAACATG-CTTCGAAGCCAC 982
Query 689 GAGAAGAGAAAAGGAAAGATCCCTTTTTTAGAGGAAAACTCGGTAAAGAGAAGATATCCT 748
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||
Sbjct 983 GAGAAGAGAAAAGGAAAGATCCCATTTTTAGAGGGAAACACGGTAAAGAGAAGATATCCT 1042
Query 749 CATCCGCTACTCAAGAAACTTATCAACC-CCGTAAAAGCCTATGCAATTGCCCTCCATCC 807
||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1043 CATCCTCTACTCGAGAAACTTATCAACCTCC-TAAAAGCCTATGCAATTGCCCTCCATCC 1101
Query 808 ATGGTGTTGCAATTCTTGAACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 867
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 ATGGTGTTGCAATTCTTGGACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 1161
Query 868 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCAAGAAGAAGCC---AAGT 924
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1162 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCATGAAGAAGCCGCCAAGT 1221
Query 925 AGCCCCACAGAAATATGCAATCAACTTAACAGAAACAGTGAGATCAAGCCAGTAAGCAAT 984
||| |||||||||||||||| |||||||| ||| | | ||||||||||| |||| |||||
Sbjct 1222 AGCACCACAGAAATATGCAAACAACTTAATAGAGAGAATGAGATCAAGCAAGTAGGCAAT 1281
Query 985 TCAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1044
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ACAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1341
Query 1045 ACAGTCCCGTTCTGATAA-ATTCAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1103
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1342 ACAGTCCCGTTCTGATAACAT-CAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1400
Query 1104 ACGTCCATGTTCTGGATCAGACA-TTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTCTA 1162
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1401 ACATCCATGTTCTGGACCAGACAGTTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTATA 1460
Query 1163 AGAAGAACACAGTGTTTGTTATTCTTTGCGGTTGGTAACTAATATAGTAATATCAGTATT 1222
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1461 AGAAGAACACACTGTTTGTTATTCTTTGCGGTTGGTAACCAATATAGTAATATCAGTATT 1520
Query 1223 GT-GTCTC 1229
| |||||
Sbjct 1521 -TCGTCTC 1527
Score = 416 bits (225), Expect = 2e-115
Identities = 336/385 (87%), Gaps = 26/385 (7%)
Strand=Plus/Plus
Query 117 gaaggagagaaaagataagaaggagaagaaggagaagaagaggaaggaaagggaaggaaa 176
||||||||| || || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 159 GAAGGAGAGGAAGGAGAAGAAGGAGAAGAAGGAGAAAAAGAGGAAGGAGAGGGAAGGAAA 218
Query 177 ggaaggTGTAAGCGAAAAACACAGTCAGAAGAGACGGCGTAAAGAAGAAGGTGCCAAAGA 236
||||| || ||||||||| | |||||| ||||||||||||||||||| | |
Sbjct 219 GGAAGTTGGAAGCGAAAAGCGCAGTCATAAGAGACGGCGTAAAGAAG-A-----C----- 267
Query 237 TGGTGCGAATCAGAAAGTTGATCCTTTTCACAAACTAAAAGAAAGTGAAACCAATTGTTT 296
||||| | |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 268 -GGTGC---T---AAAGTTGATCTTTTTCACAAACTAAAAGAAAGTGAAGTCAATTGTTT 320
Query 297 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAGAACTCTTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAAAACTCTTG 380
Query 357 TGATAGCACTCTTAATAGCAATGAGATATTACCGAAGCAGAAGGAGAAGCAGCAGCCTCT 416
||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 381 TGATAGCACTCTTAACAGCAATGAGATGTTACCGAAGCAGAAGGAGGTCCAGCAGCCTCT 440
Query 417 CGATGGTAGACATAACAACAACCAGAA-GCAGAAG-GAG---A-AA-CAGCAGCCTCTCG 469
|||||||||||||||||||||| | || | ||||| | | | || |||||||||||||
Sbjct 441 CGATGGTAGACATAACAACAACAACAACG-AGAAGCGTGTGGAGAAGCAGCAGCCTCTCG 499
Query 470 ATGTTAGACATAACAACAACAACGA 494
||| |||||||||||||||||||||
Sbjct 500 ATGGTAGACATAACAACAACAACGA 524
Score = 130 bits (70), Expect = 3e-29
Identities = 91/100 (91%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCA-GAAGGAGA 454
|||||||||||||||||||||||||||||||||||||||| | |||||| | |||||
Sbjct 480 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGTGT-GGAGA 538
Query 455 AACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494
| |||||||||||||||| |||||||||||||||||||||
Sbjct 539 AGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGA 578
Score = 130 bits (70), Expect = 3e-29
Identities = 90/99 (91%), Gaps = 3/99 (3%)
Strand=Plus/Plus
Query 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAAGGAGAA 455
|||||||||||||||||||||||||||||||||||||||| | |||||| || |||||
Sbjct 534 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGGATTGAGAA 593
Query 456 ACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494
|||||||||||| ||| |||||||||||||||||||||
Sbjct 594 GCAGCAGCCTCTCAATGGTAGACATAACAACAACAACGA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5