BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491042 Length=1229 Score E Sequences producing significant alignments: (Bits) Value AT4G35940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1264 0.0 > AT4G35940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17787.1); Has 45288 Blast hits to 24095 proteins in 1140 species: Archae - 93; Bacteria - 2895; Metazoa - 13424; Fungi - 2873; Plants - 1183; Viruses - 123; Other Eukaryotes - 24697 (source: NCBI BLink). | chr4:17021672-17023764 FORWARD LENGTH=1527 Length=1527 Score = 1264 bits (684), Expect = 0.0 Identities = 796/848 (94%), Gaps = 15/848 (2%) Strand=Plus/Plus Query 390 GAAGCAGAAGGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACCAGAAGCAGAA 449 ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 687 GAAGCGGATTGAGAAGCAGCAGCCTCTCAATGGTAGACATAACAACAAGGAGAAGCAGAA 746 Query 450 GGAGAAACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGACTCTGAAAGCATCAT 509 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 747 AGAGAAACAGCAGCCTCTCGATGTTAGACAT---AACAACAACGACTCTGAAAGCATCAT 803 Query 510 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 863 Query 570 TCAAGAAAAACCAGGTCCTTCCCGGGGAATAAAGTTTGATTCGTCCCAGGTTGCTACTAG 629 ||||||||||||||||||||| |||||||||||||| || |||||||| || ||||||| Sbjct 864 TCAAGAAAAACCAGGTCCTTCTCGGGGAATAAAGTTAGACTCGTCCCAACTTCCTACTAG 923 Query 630 AGAGCCTGTTAATCAACATCCTTGTTCCACTTCTGCACCAGAACATGTCT-CAAAGCCAC 688 |||||| |||||||||||||||||||||||||||||| ||||||||| || | ||||||| Sbjct 924 AGAGCCGGTTAATCAACATCCTTGTTCCACTTCTGCAGCAGAACATG-CTTCGAAGCCAC 982 Query 689 GAGAAGAGAAAAGGAAAGATCCCTTTTTTAGAGGAAAACTCGGTAAAGAGAAGATATCCT 748 ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct 983 GAGAAGAGAAAAGGAAAGATCCCATTTTTAGAGGGAAACACGGTAAAGAGAAGATATCCT 1042 Query 749 CATCCGCTACTCAAGAAACTTATCAACC-CCGTAAAAGCCTATGCAATTGCCCTCCATCC 807 ||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1043 CATCCTCTACTCGAGAAACTTATCAACCTCC-TAAAAGCCTATGCAATTGCCCTCCATCC 1101 Query 808 ATGGTGTTGCAATTCTTGAACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 867 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 ATGGTGTTGCAATTCTTGGACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 1161 Query 868 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCAAGAAGAAGCC---AAGT 924 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1162 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCATGAAGAAGCCGCCAAGT 1221 Query 925 AGCCCCACAGAAATATGCAATCAACTTAACAGAAACAGTGAGATCAAGCCAGTAAGCAAT 984 ||| |||||||||||||||| |||||||| ||| | | ||||||||||| |||| ||||| Sbjct 1222 AGCACCACAGAAATATGCAAACAACTTAATAGAGAGAATGAGATCAAGCAAGTAGGCAAT 1281 Query 985 TCAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1044 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 ACAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1341 Query 1045 ACAGTCCCGTTCTGATAA-ATTCAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1103 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1342 ACAGTCCCGTTCTGATAACAT-CAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1400 Query 1104 ACGTCCATGTTCTGGATCAGACA-TTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTCTA 1162 || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || Sbjct 1401 ACATCCATGTTCTGGACCAGACAGTTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTATA 1460 Query 1163 AGAAGAACACAGTGTTTGTTATTCTTTGCGGTTGGTAACTAATATAGTAATATCAGTATT 1222 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1461 AGAAGAACACACTGTTTGTTATTCTTTGCGGTTGGTAACCAATATAGTAATATCAGTATT 1520 Query 1223 GT-GTCTC 1229 | ||||| Sbjct 1521 -TCGTCTC 1527 Score = 416 bits (225), Expect = 2e-115 Identities = 336/385 (87%), Gaps = 26/385 (7%) Strand=Plus/Plus Query 117 gaaggagagaaaagataagaaggagaagaaggagaagaagaggaaggaaagggaaggaaa 176 ||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 159 GAAGGAGAGGAAGGAGAAGAAGGAGAAGAAGGAGAAAAAGAGGAAGGAGAGGGAAGGAAA 218 Query 177 ggaaggTGTAAGCGAAAAACACAGTCAGAAGAGACGGCGTAAAGAAGAAGGTGCCAAAGA 236 ||||| || ||||||||| | |||||| ||||||||||||||||||| | | Sbjct 219 GGAAGTTGGAAGCGAAAAGCGCAGTCATAAGAGACGGCGTAAAGAAG-A-----C----- 267 Query 237 TGGTGCGAATCAGAAAGTTGATCCTTTTCACAAACTAAAAGAAAGTGAAACCAATTGTTT 296 ||||| | |||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 268 -GGTGC---T---AAAGTTGATCTTTTTCACAAACTAAAAGAAAGTGAAGTCAATTGTTT 320 Query 297 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAGAACTCTTG 356 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 321 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAAAACTCTTG 380 Query 357 TGATAGCACTCTTAATAGCAATGAGATATTACCGAAGCAGAAGGAGAAGCAGCAGCCTCT 416 ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct 381 TGATAGCACTCTTAACAGCAATGAGATGTTACCGAAGCAGAAGGAGGTCCAGCAGCCTCT 440 Query 417 CGATGGTAGACATAACAACAACCAGAA-GCAGAAG-GAG---A-AA-CAGCAGCCTCTCG 469 |||||||||||||||||||||| | || | ||||| | | | || ||||||||||||| Sbjct 441 CGATGGTAGACATAACAACAACAACAACG-AGAAGCGTGTGGAGAAGCAGCAGCCTCTCG 499 Query 470 ATGTTAGACATAACAACAACAACGA 494 ||| ||||||||||||||||||||| Sbjct 500 ATGGTAGACATAACAACAACAACGA 524 Score = 130 bits (70), Expect = 3e-29 Identities = 91/100 (91%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCA-GAAGGAGA 454 |||||||||||||||||||||||||||||||||||||||| | |||||| | ||||| Sbjct 480 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGTGT-GGAGA 538 Query 455 AACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494 | |||||||||||||||| ||||||||||||||||||||| Sbjct 539 AGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGA 578 Score = 130 bits (70), Expect = 3e-29 Identities = 90/99 (91%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAAGGAGAA 455 |||||||||||||||||||||||||||||||||||||||| | |||||| || ||||| Sbjct 534 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGGATTGAGAA 593 Query 456 ACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494 |||||||||||| ||| ||||||||||||||||||||| Sbjct 594 GCAGCAGCCTCTCAATGGTAGACATAACAACAACAACGA 632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60391255635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5