BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491044
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35920.1 | Symbols: MCA1 | PLAC8 family protein | chr4:17011... 2798 0.0
AT2G17780.1 | Symbols: MCA2 | PLAC8 family protein | chr2:77248... 767 0.0
> AT4G35920.1 | Symbols: MCA1 | PLAC8 family protein | chr4:17011788-17015256
REVERSE LENGTH=2003
Length=2003
Score = 2798 bits (1515), Expect = 0.0
Identities = 1781/1903 (94%), Gaps = 43/1903 (2%)
Strand=Plus/Plus
Query 1 GGGGTGCTCTTGAGCTCCGACGAGTGGCAAGT---GAAGGTGTGGGAGGAGGAAAGCAAA 57
|||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| ||
Sbjct 1 GGGGGGCTCTTGAGCTCCGACGAGTGGCAAGTGAAGAAGGTGTGGGAGAAAGAAAGCTAA 60
Query 58 TGAGAGAAATACATAAATCGACAAAAACAAACCGTCTTCTCATCTCTGCCTCTGGATTTA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGAGAGAAATACATAAATCGACAAAAACAAACCGTCTTCTCATCTCTGCCTCTGGATTTA 120
Query 118 ACTCTCTTCTCTTCAC-GCTGCAGACTTATGGA-CTTTTTCTTTG-T--TGCTTTTGTTG 172
|||||| | |||||| | ||| | || | | ||| |||| || | | ||||| |
Sbjct 121 ACTCTC--C-CTTCACAGTTGC--A--TA-GAATCTTCTTCTCTGCTCAT-ATTTTGAAG 171
Query 173 ---TC-GCAGTCGAAGAAACTGCTCCCTCTTTTAGTCAAGTCTCTCTTCACTCCCTCAAT 228
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 172 AAATCTCCAGTCGAAGAAACTGCTCCCTCTTTTAGTCAATTCTCGCTTCACTCCCTCAAT 231
Query 229 ATAATGCGATTTCTCAACCGGAATATCTGAATCTCTCGGTGGTTACCTCTGATTTAGCGT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 232 ATAATGCGATTTCTCAACCGGAATATCTGAATCTCTCGGTGGTTACCTCTGATATATCGC 291
Query 289 C-GGAAACTTG-ACTCCTACTCGATCTCTATCAACAATGCCGGCCTTGTAGAACTTTGGA 346
| || ||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 292 CAGG-AAC-TGAACTCCTACTCGATCTCTATCAACAATGCCGTCCTTGTAGAACTTTGGA 349
Query 347 TCCAACTCTCTCATTCCGTCAATTTCCATAAACATCAGCTCTGTC-AAGGTTAA--ATGA 403
||||||||||| ||||||||||||||||| || |||||||| | | |||| || |||
Sbjct 350 TCCAACTCTCTGATTCCGTCAATTTCCATTAATATCAGCTCAG-CGAAGG--AACTTTGA 406
Query 404 ATTGAAGAAGGA-AATGTCACATTCATGGGATGGTCTTGGAGAGATCGCGTCAGTGGCGC 462
| |||||| || ||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 407 GTAGAAGAA-GATAATGTCACATTCATGGGATGGTCTTGGGGAGATTGCGTCAGTGGCTC 465
Query 463 AGCTCACTGGTTTAGATGCCGTCAAGTTGATTGGCCTTATAGTTAAAGCTGCCAATACTG 522
|||| |||||||||||||| |||||||||||||| || ||||| |||||||| |||||||
Sbjct 466 AGCTGACTGGTTTAGATGCGGTCAAGTTGATTGGTCTCATAGTCAAAGCTGCGAATACTG 525
Query 523 CTTGGATGCACAAGAAGAATTGTCGCCAATTCGCTCAACATCTCAAACTCATTGGGAATT 582
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 526 CTTGGATGCATAAGAAGAATTGTCGTCAATTCGCTCAACATCTCAAACTCATTGGGAATT 585
Query 583 TGCTTGAGCAGCTGAAGATCTCTGAGATGAAGAAGTATCCAGAGACTCGAGAGCCTCTCG 642
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 TGCTTGAACAGCTGAAGATCTCTGAGATGAAGAAGTATCCTGAGACTCGAGAGCCTCTCG 645
Query 643 AAGGGCTCGAGGATGCTTTGAGGAGGTCTTACCTTCTGGTCAATAGCTGTAGGGACCGGA 702
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 646 AAGGGCTTGAGGATGCTTTGAGAAGGTCTTACCTTCTGGTCAATAGCTGTAGAGACCGGA 705
Query 703 GCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAGTTCAGGAAACATCAGG 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAGTTCAGGAAACATCAGG 765
Query 763 ATGAGATTGATCGTTTTCTTAAGATCATACCTCTCATCACTTTGGTGGATAACGCTCGCA 822
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 766 ATGAGATTGATCGTTTTCTTAAGATCATACCTCTCATCACTTTGGTCGATAACGCTCGCA 825
Query 823 TTCGGGAGAGGTTTGAGTATATTGACCGTGATCAGCGTGAGTACACTCTGGATGAAGAGG 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTCGGGAGAGGTTTGAGTATATTGACCGTGATCAGCGTGAGTACACTCTGGATGAAGAGG 885
Query 883 ATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGCATCAGTGC 942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 886 ATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGCATCAGTAC 945
Query 943 TGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCTCTCAAAACAG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCTCTCAAAACAG 1005
Query 1003 AAAACGAGAAACTGCAGCTTGAACTTCAGCGTTCGCAGGAGCATTATGATGTAGCTCAGT 1062
||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1006 AAAACGAGAAACTGCAGATCGAACTTCAGCGGTCGCAGGAGCATTATGATGTGGCTCAGT 1065
Query 1063 GTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTGTTGAACCTGACT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTGTTGAACCTGACT 1125
Query 1123 CTGAGAAGGAGCTGACAAAGAAAGCTTCGAAAAAATCTGAGCGTAGCTCAAGCATGAAGA 1182
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1126 CTGAGAAGGAGCTGACAAAGAAAGCTTCCAAAAAATCTGAACGTAGCTCAAGCATGAAGA 1185
Query 1183 CAGAATATTCGTATGACGAAGATTCTCCCAAGAAAAGCAGTAGTCGTGCAGCTTCCAGAT 1242
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1186 CGGAATATTCGTATGACGAAGATTCTCCCAAGAAAAGCAGTACTCGTGCAGCTTCGAGAT 1245
Query 1243 CCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGTACAAC 1302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1246 CCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGCACAAC 1305
Query 1303 ACCATGAAGAATGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTGCTTGA 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1306 ACCATGAAGAATGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTGCTTCA 1365
Query 1363 AGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCTAACAGGC 1422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1366 AGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCCAACAGGC 1425
Query 1423 ACATCTCTTCAGCTGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCGTGTT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1426 ACATCTCTTCAGCTGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCTTGTT 1485
Query 1483 GCTGCTATACTTGTTGCGTAAGGAGGAAACTCCGGAAGACACTGAACATCACGGGAGGGT 1542
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1486 GCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGGGAGGAT 1545
Query 1543 TCATTGACGATTTTCTATCTCATCTGATGTGTTGTTGCTGTGCTCTTGTCCAAGAACTGA 1602
||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct 1546 TCATTGACGATTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAAGAACTGA 1605
Query 1603 GAGAAGTAGAGATTCGTGGGGCTTATGGTACGGAGAAGACGAAAATAAGTCCGCCTTCGT 1662
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1606 GAGAAGTTGAGATTCGTGGGGCATATGGTACGGAGAAGACGAAAATAAGCCCGCCTTCGT 1665
Query 1663 CGCAGTTCATGGAACATTGAAATCTTCTATTACACAAAAGGTGAACAAAAACAACTATAT 1722
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1666 CGCAGTTCATGGAACATTGAAATCTTCTATTATACAAAAGGTGAACAAAAACAACGATTT 1725
Query 1723 GTTGTAACTCTGGATATGACAGGAGATTCTTCTTCGTACTACACACTTAATATCT-TTGT 1781
|||||||||||||||| || | |||||||||||||||||||| |||||||||| | ||||
Sbjct 1726 GTTGTAACTCTGGATACGAGACGAGATTCTTCTTCGTACTACTCACTTAATAT-TATTGT 1784
Query 1782 TTTAATTT-TGGAGTCGTATGTAAATTAATTTGGGATTCTCATCGAAATTTCAGCAATTT 1840
|||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1785 GTTAAATCGTGGAGTCGTATGTAAATTAGTTTGGGATTCTCATCTTAATTTCAGCAATTT 1844
Query 1841 GTG--GTGTGTATCACATAGACTATAGACTAACTACTTCTTAT 1881
||| |||||||||||||| || ||||||||| |||||||
Sbjct 1845 GTGTTGTGTGTATCACATA---TA--GACTAACTAATTCTTAT 1882
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1882 GATGGCCAATTTAACCAAACTTGTGTTTTGGGTCAAAATAGTAGT 1926
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1922 GATGGCCAATTGAACCAAACTTGTGTTTTGGGTCAAAATAGTAGT 1966
> AT2G17780.1 | Symbols: MCA2 | PLAC8 family protein | chr2:7724885-7727404
REVERSE LENGTH=1681
Length=1681
Score = 767 bits (415), Expect = 0.0
Identities = 991/1260 (79%), Gaps = 76/1260 (6%)
Strand=Plus/Plus
Query 410 GAAG-GAAATGTC-ACATTCATGGGAT-GGTCTTGGAGAGATCGCGTCAGTGGCGCAGCT 466
|||| |||||| | | ||||||||||| || | ||||| || ||||||||||| |||||
Sbjct 153 GAAGAGAAATGGCTA-ATTCATGGGATCAGT-TAGGAGAAATTGCGTCAGTGGCTCAGCT 210
Query 467 CACTGGTTTAGATGC-CGTCAAGTTGATTGGCCTTATAGTTAAA-GCTGCCAATACTGCT 524
|| || |||| || | | || ||||||| | |||| |||| ||||| ||||| |||
Sbjct 211 TACAGGCATAGACGCTC-TGAAACTGATTGGAATGATAG-TAAACGCTGCGAATACAGCT 268
Query 525 TGGATGCACAAGAAGAATTGTCGCCAATTCGCTCAACATCTCAAACTCATTGGGAATTTG 584
| |||||||||||||||||||| ||||||||||| ||||| || ||||| | ||||||
Sbjct 269 CGAATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTG 328
Query 585 CTTGAGCAGCTGAAGATCTCTGAGATGAA-GAA-GTATCCAGAGACTCGAGAGCCTC-TC 641
|| |||||| | || | |||||||||||| || || | |||||| || ||||| | ||
Sbjct 329 CTAGAGCAGATTAAAAACTCTGAGATGAATCAACGT-T-CAGAGATTCTTGAGCCGCTTC 386
Query 642 GAAGGGCTCGAGGATGCT-TTGAGGAGGTCTTACCTTCTGGTCAATAGCTGT-AGGGACC 699
|||| || || |||||| || || || |||||| || | ||||| || ||| | ||
Sbjct 387 -AAGGACTTGATGATGCTCTT-AGAAGATCTTACATTTTAGTCAAAAGTTGTCA-AGAAA 443
Query 700 GGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAG-TTCAGGAAA-CA 757
|| ||||||||||||||||||||||| |||||||||||| ||||| || | ||| |
Sbjct 444 AAAGTTATCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGA-AAAAGC- 501
Query 758 TCAGGATGAGATTGATCGT-TTTCTTAAGATCATACCTCTCATCACTTTGGTGGATAACG 816
|||| |||||||||||| | ||||| |||||| | || || || | | ||| |||||| |
Sbjct 502 TCAGAATGAGATTGATC-TGTTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATG 560
Query 817 CTCGCATTCGGGAGAGGTTTG-AGTATATTGACCGTGATCAGCGTGAGTACACTCTGGAT 875
|||| |||||||||||| | | || |||||| ||||||||||||||||| ||||| |||
Sbjct 561 CTCGGATTCGGGAGAGGCTAGAAG-CTATTGAACGTGATCAGCGTGAGTATACTCTTGAT 619
Query 876 GAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGC- 934
|||||||||||| | ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 620 GAAGAGGATAGAAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCT 679
Query 935 A--TCAGTGCTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCT 992
| || || | |||||||| |||||| | |||||||| ||| || | ||||| |||||
Sbjct 680 ACATCGGTTTTAAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCG 739
Query 993 CTCAAAACAGAAAACGAGAAACTGCAGCTTGAACTT-CAGCGTTCGCAGGAGCATTATGA 1051
|| ||||| || | ||||||||||| ||||| || || ||||||| || || |||||
Sbjct 740 CTTAAAACCGAGGAGGAGAAACTGCAACTTGAG-TTGCAACGTTCGCGGGCGCGGTATGA 798
Query 1052 TG-TAGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTG 1110
|| | | ||| |||||||| || || ||||| |||| |||||||||| |||||||| |||
Sbjct 799 TGCT-GATCAATGTGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACTG 857
Query 1111 TTGAACCTGACTCT-GAGAAGGAGCTGACAAAGAAAGCTTCGAAAAAATCTGAGCGTAGC 1169
|||||||| | ||| || |||| | |||| ||||||| || |||| || |
Sbjct 858 TTGAACCTAA-TCTTGAAAAGGTGTTGACTAAGAAAG-----AA-------GAGCTTACC 904
Query 1170 TCAAGCATGAAGACAGAAT-ATTCGTATGACGAAG-ATTCTCCCAAGAAAAGCAGTAGTC 1227
|| |||| ||||| ||| | ||| ||||||| | | || | | | | |||| ||
Sbjct 905 TCTAGCAAGAAGAGAGA-TGATTTGTATGAC-ACGGAT------A-GTA--GTAGTATTC 953
Query 1228 GTGCAGCTTCCAGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAG 1287
| |||| ||| ||||| || ||| |||||||||| || ||||| || ||||| |||||
Sbjct 954 GAGCAGATTCAAGATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGAT 1013
Query 1288 CATCACAGGTACAACACCATGAAGAAT-GGCATACCGACTTACTAGCTTGTTGCTCGGAA 1346
||| | ||||||| || | ||| |||| ||||||| || | |||||| || |||
Sbjct 1014 CATT---G---CAACACCGTGGA-AATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAA 1066
Query 1347 CCTTCTCTTTGCTTGAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACT 1406
|||| |||||||||||||||| |||||||||| |||||||| |||||||||||| |||||
Sbjct 1067 CCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGTACATTGGCAAAGATTTCCACT 1126
Query 1407 GCAGCATCTAACAGGCACATCTCTTCAGCTGAAGCATGTAATGAGC-TAATGGCGTATTC 1465
| ||| ||| ||||| ||||||||| |||||| ||||| || | |||| | ||||||
Sbjct 1127 GTGGCAACTAGTAGGCAAATCTCTTCAACTGAAGTGTGTAA-GAACCTAATCGTGTATTC 1185
Query 1466 TTTGATACTTTCGTGTTGCTGCTATACTTGTTGCGTAAGGAGGAAACTCCGGAAGACACT 1525
||||||||| || || || ||||||||||| ||| |||||| ||| || || ||||||||
Sbjct 1186 TTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACACT 1245
Query 1526 GAACATCACGGGAGGGTTCATTGACGA-TTTTCTATCTCATCTGATGTGTTGTTGCTGTG 1584
|||||| |||||||||| ||||||||| |||| | || ||||| ||||||||||| ||||
Sbjct 1246 GAACATAACGGGAGGGTGCATTGACGACTTTT-TGTCACATCTAATGTGTTGTTGTTGTG 1304
Query 1585 CTCTTGTCCAAGAACTGAGAGAAGTAGAGATTCGTGGGGCTTAT---GGTACGGAGAAGA 1641
| ||||||||||||||||||||||| ||||||| | | |||| | ||||| |||||||
Sbjct 1305 CCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGCTTCTTACGGTACAGAGAAGA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5