BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491050
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35880.1 | Symbols: | Eukaryotic aspartyl protease family p... 2695 0.0
> AT4G35880.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr4:16993339-16995820 FORWARD LENGTH=1674
Length=1674
Score = 2695 bits (1459), Expect = 0.0
Identities = 1600/1668 (96%), Gaps = 10/1668 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTACTGTTTCTTCAAGACTAGTCTGTTCTTGATCCCGATTTTGTTGTTACTGAGC 60
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCGTGCTGTTTCTTCAAGACTACTCTGTTCTTGATCCCGATTTTGATGTTACTGAGC 60
Query 61 TTCGGGAGCTGCAATGGTCGAATCTTCACCTTCGAGATGCACCATAGATTCCCCGACGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTCGGGAGCTGCAATGGTCGAATCTTCACCTTCGAGATGCACCATAGATTCTCCGACGAA 120
Query 121 GTCAAGCAATGGTCCGATTCAACCGGGAGATTTGTTAAGTTTCCCCCTAAGGGAAGCTTC 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 GTCAAGCAATGGTCCGATTCCACCGGGAGATTTGCTAAGTTTCCCCCTAAAGGAAGCTTC 180
Query 181 GAATACTTCAACGCTCTCGTCCTTCGTGATTGGCTAATCCGTGGCCGTCGTCTCTCCGA- 239
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAATACTTCAACGCTCTCGTCCTCCGTGATTGGCTAATCCGTGGCCGTCGTCTCTCCGAG 240
Query 240 -C----TCAGAATCGGAGTCCTCACTCACTTTCTCCGACGGCAATTCCACTTCTCGTATC 294
| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 241 TCGGAATCGGAATCGGAGTCGTCGCTTACTTTCTCCGACGGCAATTCCACTTCTCGTATC 300
Query 295 AGCTCTCTCGGATTTTTGCATTACACGACGGTGAAATTGGGTACTCCGGGAATGAGATTC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTCTCTCGGATTTTTGCATTACACGACGGTGAAATTGGGTACTCCGGGAATGAGATTC 360
Query 355 ATGGTGGCGCTTGATACAGGAAGCGACCTCTTTTGGGTTCCTTGTGATTGCGGCAAATGC 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATGGTGGCGCTTGATACAGGAAGCGACCTCTTTTGGGTCCCTTGTGATTGCGGCAAATGC 420
Query 415 GCACCAACAGAAGGAGCCACTTATGCTTCTGAATTTGAACTCAGCATTTACAATCCTAAA 474
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GCACCAACCGAAGGAGCCACTTATGCTTCTGAGTTTGAACTCAGCATTTACAATCCTAAA 480
Query 475 ATTTCAACCACAAACAAGAAGGTCACCTGCAACAACAGTCTATGTGCACAGCGTAATCAA 534
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTTCAACTACAAATAAGAAGGTCACCTGCAACAACAGTCTATGTGCACAGCGTAATCAG 540
Query 535 TGCCTTGGAACATTCAGCACTTGCCCTTATATGGTGTCTTATGTCTCTGCTCAGACTTCC 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCCTTGGAACATTCAGCACTTGCCCTTATATGGTGTCTTATGTCTCTGCTCAGACTTCG 600
Query 595 ACATCTGGTATTCTTATGGAAGATGTTATGCACTTAACTACAGAAGATAAGAATCCAGAG 654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 ACATCTGGTATTCTTATGGAAGATGTTATGCACTTAACAACAGAAGATAAGAATCCAGAG 660
Query 655 CGTGTTGAGGCATATGTCACATTTGGATGTGGACAGGTTCAAAGCGGTTCCTTTCTTGAC 714
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 661 CGTGTTGAGGCATATGTCACATTTGGATGTGGACAGGTTCAAAGTGGTTCTTTTCTTGAC 720
Query 715 ATTGCGGCACCAAATGGTTTATTTGGTCTTGGCATGGAAAAGATATCGGTTCCAAGTGTT 774
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGCAGCACCAAATGGTTTATTTGGTCTTGGCATGGAAAAGATATCGGTTCCAAGTGTT 780
Query 775 TTGGCGAGGGAAGGTCTCGTTGCTGATTCTTTCTCCATGTGTTTCGGACATGATGGAGTT 834
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TTGGCGAGGGAAGGTCTGGTTGCTGATTCTTTCTCCATGTGTTTCGGTCATGATGGAGTT 840
Query 835 GGAAGGATCAGTTTTGGGGACAAGGGTAGTTCTGATCAGGAAGAAACGCCGTTTAACCTG 894
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 841 GGAAGGATCAGTTTTGGGGACAAGGGTAGTTCTGATCAGGAAGAGACACCGTTTAATCTC 900
Query 895 AATCCTTCACACCCAAACTACAACATCACGGTGACTCGGGTTCGTGTGGGGACTACTTTA 954
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 AATCCTTCACATCCAAACTACAACATCACGGTGACTCGGGTACGTGTGGGGACTACTTTA 960
Query 955 ATAGACGATGAGTTCACAGCTCTCTTTGACACCGGTACATCATTTACTTATTTGGTTGAT 1014
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATAGATGATGAGTTCACAGCTCTCTTTGACACCGGTACATCATTTACTTATTTGGTTGAT 1020
Query 1015 CCGATGTATACGACAGTCTCTGAGAGTTTCCATTCTCAGGCCCAAGATAAGCGCCATTCA 1074
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCAATGTATACGACAGTCTCTGAGAGTTTCCATTCTCAGGCCCAAGATAAGCGCCATTCA 1080
Query 1075 CCGGATTCAAGGATTCCATTCGAGTATTGTTATGACATGAGCAATGATGCGAATGCCAGT 1134
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 CCGGATTCAAGGATTCCATTTGAGTATTGTTATGACATGAGCAATGACGCGAATGCCAGT 1140
Query 1135 TTGATACCGAGTTTAAGCTTAACAATGAAAGGAAACAGTCACTTCACCATCAACGATCCT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTGATACCGAGTTTAAGCTTAACAATGAAAGGAAACAGTCACTTCACCATCAACGATCCT 1200
Query 1195 ATAATCGTCATCTCTACTGAGGGCGAACTTGTATATTGCCTGGCCATTGTCAAAAGCTCT 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATAATCGTCATCTCTACTGAGGGCGAACTTGTATATTGCCTGGCCATTGTCAAAAGCTCT 1260
Query 1255 GAACTCAACATAATTGGACAAAACTACATGACCGGGTACCGTGTAGTGTTCGACAGAGAG 1314
||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1261 GAACTCAACATTATTGGGCAAAACTACATGACCGGGTATCGTGTAGTATTCGACAGGGAG 1320
Query 1315 AAACTCGTCTTAGCTTGGAAAAAGTTTGACTGTTATGATATCGAAGAGACAAACACAACT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAACTCGTCTTAGCTTGGAAAAAGTTTGACTGTTATGATATCGAAGAGACAAACACAACT 1380
Query 1375 CTTGCTGGAACAAACAAAACAGCAGCCGTAGCTCCGGCAATGGCAGCCGGAATAAAGACT 1434
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1381 GTTGCCGGAACAAACAAAACAGCAGCGGTAGCTCCAGCAATGGCAGCTGGAATAAAGACT 1440
Query 1435 CATAACAATTCCTCAGAGCTACACAAAACAAACCAAACCATCTCCAAAAGTAGCTCCTCG 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1441 CATAACAATTCCTCAGAGCTACACAAAACAAACCAAACCATCTCCAAAAGTAACTCCTCC 1500
Query 1495 TCAAACCAAAGATTTAAAACAGTAAA-GATATGGTCCTTTTTCAGATTTGTGTTCATATT 1553
||||||||| || ||||||||| | | ||||||| |||||||||||||||||||||||
Sbjct 1501 CCAAACCAAATATCCAAAACAGTAGATG-TATGGTCTTTTTTCAGATTTGTGTTCATATT 1559
Query 1554 ACTTCCACTTGTGTAGATTTGTAAGCCCCCTCCAAAACACAGGCCAATAGTAttttttt- 1612
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1560 ACTTCCACTTGTGTAGATTTGTAAGCCCCATCCAAAACACATGCCAATAGTATTTTTTTT 1619
Query 1613 GTATCATAACGAGACTATAGAGATTTTCTTCAGGAAATATATGCTCTT 1660
|||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1620 GTATCATAACGACACTATAGGGATTTT-TTCAGGAAATATATGCTCTT 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5