BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491051
Length=2685
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35870.1 | Symbols: | early-responsive to dehydration stres... 4318 0.0
> AT4G35870.1 | Symbols: | early-responsive to dehydration stress
protein (ERD4) | chr4:16990173-16992888 FORWARD LENGTH=2716
Length=2716
Score = 4318 bits (2338), Expect = 0.0
Identities = 2552/2655 (96%), Gaps = 15/2655 (1%)
Strand=Plus/Plus
Query 1 TTTTTCCATCATCTTCGTCGATCTACTT-CCCCAAAATCTAACCCTAAAGCCCCCAAATT 59
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 11 TTTTGCCATCATCTTCGTCGATCTACTTCCCCCAAAGTCTAACCCTAAAGCCCCCAAATT 70
Query 60 TCTCGTGATCATAATAAGC-T-TTGTATAAATCCTGAATCTCTGAAGAAACTTTGAAGAT 117
|||| ||||| || || | | ||||||||||||||||||||||||||||||| ||||||
Sbjct 71 TCTCCTGATC--AA-AACCTTGTTGTATAAATCCTGAATCTCTGAAGAAACTTCGAAGAT 127
Query 118 TTGGGTTTCTCAATTTGGTTGAGAAATTCACGATGCATCGCAATTTTTCACCAGCTGCGA 177
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 128 TTGGGTTTCTCAATTTGGTTGAGAAATTCGCGATGAATCGCAATTTTTCACCAGCTGCGA 187
Query 178 TGCCACCGATTTCATCAATGACAATGGATGATTCATTCTCTCCTCCCCCATCTTCCGGCG 237
||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 188 TGCCACCGATTTCATCAATGACAATAGATAATTCATTCTCTCCTCCTCCATCTTCCGGCG 247
Query 238 ACTTACCGGAAATACCC-GATGCTTGGTACGGTAACATTCAGTATCTGCTTAATATCTCG 296
||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 248 ACTTACCTGAAAT-CCCAGATGCTTGGTACGGCAACATTCAGTATCTGCTTAATATCTCG 306
Query 297 GTCATTGGTCTCTTATGCTGCGTCTCCAT-TTTCCTCTTCGTTAAGCTACGCAGCGACCA 355
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 307 GTCATTGGTCTCTTATGCTGCGTCTCCATCTTT-CTCTTCGTTAAGCTACGCAGCGACCA 365
Query 356 CCGTCGTATGCCTGGTCCTTCTGCTCTCTTCTCTAAGCTCCTCGCCGTTTGGAAAGCCAC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CCGTCGTATGCCTGGTCCTTCTGCTCTCTTCTCTAAGCTCCTCGCCGTTTGGAAAGCCAC 425
Query 416 GTGTCGTGAGATCGCTCGTCACTGTGGTGCTGATGCTGCTCAGTTTCTTTTAATCGAAGG 475
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 GTGTCGCGAGATCGCTCGTCACTGTGGTGCTGATGCTGCTCAGTTTCTTTTAATTGAAGG 485
Query 476 TGGAAGCTTTGTGCTTCTTTTCTCCATTGCTGTTTTAGCTGTTTCGGTTATGCTTCCGTT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGGAAGCTTTGTGCTTCTTTTCTCCATTGCTGTTTTAGCTGTTTCGGTTATGCTTCCGTT 545
Query 536 GAATTTATATGCTGGGACTGCTTTGTTGAGTGATGAGCTTTCGAAAACGATGATTACTCA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 GAATTTATATGCTGGGACTGCTTTGTTGAGTGATGAGCTTTCGAAAACGATGATTACGCA 605
Query 596 TATTCAGAAAGGTTCAGCTCTGCTTTGGCTGCATTttgtgtttgttgttattgttgttgt 655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TATTCAGAAAGGTTCAGCTTTGCTTTGGCTGCATTTTGTGTTTGTTGTTATTGTTGTTGT 665
Query 656 tATCTCGCATTTCGGAATTGCTGCCATTGAAGCTAGGTTGAAATTTACTAGGTTTAGAGA 715
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 666 TATCTCGCATTTTGGAATCGCTGCTATTGAAGCTAGGTTGAAGTTTACTAGGTTTAGAGA 725
Query 716 TGGGAATGGGAATATAAGCGACCCCAATGCGAATTCTACTGCTGTGTTTACTATAATGGT 775
||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 726 TGGGAATGGGAATATCAGTGACCCGAACGCGAATTCTACTGCTGTGTTTACTATAATGGT 785
Query 776 GCAGGGTTTGCCTAAGAATTTAGGGTCTGATAGAGTTGAGTTTGAAGAGTGCTTTAGGCT 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 786 GCAGGGTTTGCCTAAGAATTTAGGGTCTGATAGAGTTGAGTTTGAAGATTGCTTTAGGCT 845
Query 836 GAAGTACCCGGGGAAAGTTTATAAGATTATTGTTCCCATGGATTTGTGTGCGTTGGATGA 895
||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 846 GAAGTACCCTGGGAAAGTTTATAAGTTTATTGTTCCCATGGATTTGTGTGCTTTGGATGA 905
Query 896 TCTTGCTACAGAGTTGGTTCGTGTTCGGGATGAGATTACTTGGTTAGTTGCCAAGATGGA 955
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 906 TCTTGCTACAGAGTTGGTTCGTGTTCGAGATGAGATTACTTGGTTAGTTGCCAAGATGGA 965
Query 956 CTCTAGGCTTCTACCGGATGAGTTTGAGAATGCTGGAGATAACGGACTATTG-TCTTGTG 1014
||||||||||||||||||||||| |||||||| |||||||||||||||| || || ||||
Sbjct 966 CTCTAGGCTTCTACCGGATGAGTATGAGAATGTTGGAGATAACGGACTAGTGTTC-TGTG 1024
Query 1015 TGTGTGCTTTGTGGATTAGGGTGAAGGTTTTGTGGTCTCAGGTTACAGAGAGGTTTGGTT 1074
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1025 TGTGTTCTTTGTGGGTTAGGGTGAAGGTTTTGTGGTCTCAGATTACAGAGAGGTTTGGAT 1084
Query 1075 TTACAGATGATGAGAAACTTAGGAAGCTGCAAGAATTGAGAGCTGATTTAGAGTCTCAGT 1134
||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1085 TTACAGATGATGAAAAACTGAGGAAGCTGCAAGAACTGAGAGCTGATTTGGAGTCTCAGT 1144
Query 1135 TAGCAGCTTATAAAGAAGGACGAGCACAAGGCGCTGGGGTTGCTTTTGTGATGTTTAAAG 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1145 TAGCAGCTTATAAAGAAGGACGAGCACAAGGCGCTGGGGTTGCTTTTGTGATGTTTAAGG 1204
Query 1195 ATGTGTACACAGCTAATAAGGCTGTTCAGGATTTTCGAAACGAGAGATCAAGGCGTACTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ATGTGTACACAGCTAATAAGGCTGTTCAGGATTTTCGAAACGAGAGATCAAGGCGTACTG 1264
Query 1255 GAAAGTTTTTCTCTGTCACAGAGCTGCGGTTACAGAGAAACCAGTGGAAAGTGGACAGAG 1314
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1265 GAAAGTTCTTCTCTGTCACAGAGCTGCGATTACAGAGAAACCAGTGGAAAGTGGACAGAG 1324
Query 1315 CACCCTTGGCTACTGATATTTATTGGAATCATCTGGGATTGACAAAAGTTGCTCTTATCG 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1325 CACCCTTGGCTACTGATATTTATTGGAATCATCTGGGATTGACAAAAGTTGCTCTTATTG 1384
Query 1375 TGCGAAGAGTGATTGTTAATACTATTCTGCTATTGATTCTTGTGTTTTTCAGCTCCCCAT 1434
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1385 TGCGAAGAGTGATTGTTAATACTATTCTACTGTTGATTCTTGTGTTTTTCAGCTCCCCAT 1444
Query 1435 TGGCCTTGATTAGTGCATTGGTAAGTGCCGGGCGAATCTTCAATGCTGAAGCATTGGATA 1494
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1445 TGGCCTTGATCAGTGCATTGGTAAGTGCCGGGAGAATCTTCAATGCTGAAGCATTGGATA 1504
Query 1495 GTGCTCAGTCTTGGCTCGCTTGGGTGCAAACTTCTGGCTGGATTGGATCTTTGATTTTTC 1554
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1505 GTGCTCAGTATTGGCTCACTTGGGTGCAAACTTCTGGCTGGATTGGATCTCTGATTTTTC 1564
Query 1555 AGTTCCTGCCCAACGTCTTCATATTTGTTAGTATGTACATTGTAATCCCTTCTGCTCTCT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1565 AGTTCCTGCCCAACGTCTTCATATTTGTTAGTATGTACATTGTAATCCCTTCTGCGCTCT 1624
Query 1615 CGTATCTTTCCAAGTTTGAGCGGCATCTAACAGTGTCTGGGGAACAAAGAGCAGCTCTCT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CGTATCTTTCCAAGTTTGAGCGGCATCTAACAGTGTCTGGGGAACAAAGAGCAGCTCTCT 1684
Query 1675 TGAAGATGGTTTGCTTCTTCCTTGTGAACCTCATCATTCTCAAGGCTCTTGTGGAGTCGT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 TGAAGATGGTTTGCTTCTTCCTTGTGAACCTCATCATTCTCAAGGCTCTTGTGGAGTCGT 1744
Query 1735 CGCTGGAAAGCGCACTCTTGAAAATGAGTCGGTGCTATTTAGATGGTGAGGATTGCAAGA 1794
| |||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 1745 CACTGGAAAGTGCACTCCTGAAAATGAGCCGTTGCTATTTAGATGGTGAGGATTGCAAGA 1804
Query 1795 GGATTGAAGAATACATGAGCCCTTCCTTCTTATCAAGGTCATGCGTTTCGGCTCTAGCTT 1854
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1805 GGATTGAAGAATACATGAGCCCTTCCTTCTTATCAAGGTCATGCGTTTCAGCTCTAGCTT 1864
Query 1855 TTCTCATCACAAGCACGTTCTTAGGAATCTCCTTTGATCTACTTGCTCCAATCCCGTGGA 1914
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1865 TTCTCATCACAAGCACGTTCCTAGGAATCTCCTTCGATCTACTCGCTCCAATCCCGTGGA 1924
Query 1915 TCAAGaaaaaaaTCCAGAAGTTCAGGAAGAACGACATGCTTCAGCTTGTCCCCGAGCAAA 1974
||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1925 TCAAGAAGAAAATTCAAAAGTTCAGGAAGAATGACATGCTTCAGCTTGTCCCCGAGCAAA 1984
Query 1975 ACGAAGAGTACGCTTTGGAAAATCAAGAGCCAAGCAGCAACCTTGAGACACCACTTCTCC 2034
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1985 ATGAAGAGTACGCTTTGGAAAATCAAGAGCCAAGCAGTAACCTTGAGACACCACTTCTCC 2044
Query 2035 CTGAAAACATGTTTGAGTCTCCAAGATTCGGGGACATCGAACCTATGAGCCAAGACCTCT 2094
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2045 CTGAAAACATGTTTGAGTCTCCAAGATTCGGGGACATAGAACCTATGAGCCAAGACCTCT 2104
Query 2095 CTGAATACCCTATCAGCCGAACCTCACCAATCCCTAAACAAAAATTCGACTTTGCCCAAT 2154
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2105 CTGAATACCCAATCAGCCGAACCTCACCAATCCCTAAACAGAAATTCGACTTTGCCCAAT 2164
Query 2155 ACTACGCCTTCAATCTCACCATCTTCGCCTTAACAATGATATACTCTTCATTCGCTCCAC 2214
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2165 ACTACGCCTTCAATCTCACCATCTTTGCCTTAACAATGATATACTCTTCATTCGCTCCAC 2224
Query 2215 TCGTAGTCCCTGTAGGCGCAGTTTACTTTGGTTACAGATACATTGTCGACAAATACAACT 2274
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 TCGTGGTCCCTGTAGGCGCAGTTTACTTTGGTTACAGATACATTGTCGACAAATACAACT 2284
Query 2275 TCCTCTACGTGTACAGAGTCCGTGGCTTCCCTGCAGGCAATGAAGGAAAGCTAATGGACA 2334
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2285 TCCTTTACGTGTACAGAGTCCGTGGCTTCCCTGCAGGGAATGAAGGAAAGCTAATGGACA 2344
Query 2335 CGGTTCTGTGTATCATGCGGTTCTGTGTAGACCTGTACCTGGTCTCAATGCTGCTCTTCT 2394
||||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 2345 CGGTTTTGTGTATCATGAGATTCTGTGTCGACCTGTACCTCGTCTCAATGCTGCTCTTCT 2404
Query 2395 TTTCAGTCAAAGGAGATTCCACAAAGCTTCAAGCCATATTCACACTTGGGGTGCTTGTGA 2454
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2405 TCTCAGTTAAAGGAGATTCCACAAAGCTTCAAGCCATATTCACACTTGGAGTGCTTGTGA 2464
Query 2455 TGTACAAGCTTTTGCCTTCGGATACAGACCGGTATCACCCAGCTCTT-CTACGAAGTATT 2513
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 2465 TGTACAAGCTTTTGCCTTCGGATACAGACCGGTATCACCCAGCT-TTACTAAGAAGTATT 2523
Query 2514 CAGACCGTCGATAGCATCATCGATGGACCTGTTGATTACGAAGCTTATTCTCACCCAAAC 2573
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2524 CAGACCGTCGATAGCATCATCGACGGACCTGTGGATTACGAAGCTTATTCTCACCCAAAC 2583
Query 2574 TTCGATTGGGACACTTACAACAACAGATGATTCTACGACCTTT-AAGTCATATAAGTTTT 2632
||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||
Sbjct 2584 TTCGATTGGGACACTTACAACAACAGATGATTCTACGACCTTTTAAGTCTTACAAATTTT 2643
Query 2633 GCTCTTTGACCAAAT 2647
|||||||||||||||
Sbjct 2644 GCTCTTTGACCAAAT 2658
Score = 63.9 bits (34), Expect = 8e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 2652 TCTTCTTTGTGTATATTCCATCTTTTGTGCAATT 2685
||||||||||||||||||||||||||||||||||
Sbjct 2683 TCTTCTTTGTGTATATTCCATCTTTTGTGCAATT 2716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133343734494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5