BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491053
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-bind... 1437 0.0
AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 176 4e-43
> AT4G35860.1 | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding
2 | chr4:16986840-16989047 REVERSE LENGTH=1122
Length=1122
Score = 1437 bits (778), Expect = 0.0
Identities = 877/922 (95%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 1 AGATAGCTTCTTCATCGAGAAACCTCGAAATCAAAAAGCGCGTCGGTGACTTGTActctt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 59 AGATAGCTTCTTCATCGAGAAACCTCGAAATCAAAAAGCACGTCGGTGACTTGTACTCTT 118
Query 61 caatctcttcttcctctccttctc-tctcGCAAT-TATCGAACCCATCGACCTTGC-TTA 117
|||||||||||||||||| ||| | |||| | | | ||||||||||||||| ||| |
Sbjct 119 CAATCTCTTCTTCCTCTCTTTCACATCTC-C-TTCTCTCGAACCCATCGACC-TGCGCT- 174
Query 118 AATTCATCATCGACCTTGCTCAAATTCATTAGCCACCATGTCGTACGATTATCTCTTCAA 177
|||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 175 AATTCATCATCGACCTTGCTCAAATTCA-T--CAACCATGTCTTACGATTATCTCTTCAA 231
Query 178 GTACATAATCATCGGAGACACAGGTGTGGGAAAATCGTGTCTGCTTCTGCAATTTACTGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GTACATAATCATCGGAGACACAGGTGTGGGAAAATCGTGTCTGCTTCTGCAATTTACTGA 291
Query 238 CAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGTGTCGAGTTCGGTGCTCGGATGGT 297
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 292 TAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGTGTTGAGTTCGGTGCTCGGATGGT 351
Query 298 TACCGTCGATGGACGCCCCATCAAACTCCAAATTTGGGACACCGCTGGACAAGAGTCTTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 352 CACCGTCGATGGACGCCCCATCAAACTCCAAATTTGGGACACCGCTGGACAAGAATCTTT 411
Query 358 TAGATCCATCACCAGATCATACTACAGAGGAGCAGCTGGAGCTTTGCTGGTTTATGACAT 417
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 412 TAGATCCATCACCAGATCATACTACAGAGGAGCAGCCGGAGCTTTACTGGTTTATGACAT 471
Query 418 CACCAGGAGAGAGACGTTTAACCATCTGGCGAGCTGGTTGGAGGATGCTCGGCAACATGC 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 CACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTGGTTGGAGGATGCTCGGCAACATGC 531
Query 478 AAATCCTAACATGAGTATTATGCTGATTGGGAACAAATGTGATCTTGCTCACAAGAGAGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAATCCTAACATGAGTATTATGCTGATTGGGAACAAATGTGATCTTGCTCACAAGAGAGC 591
Query 538 TGTTAGCAAAGAGGAAGGAGAACAGTTTGCCAAAGAACATGGCCTGCTATTCTTAGAAGC 597
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAAAGAACATGGCCTGCTATTCTTAGAAGC 651
Query 598 ATCTGCAAGAACAGCTCAAAACGTTGAGGAGGCATTCATAAAGACTGCTGCCAAGATCCT 657
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 652 ATCTGCAAGAACTGCTCAAAACGTTGAGGAGGCCTTCATAGAGACTGCTGCCAAGATCCT 711
Query 658 CCAGAACATTCAGGATGGTGTCTTTGATGTATCCAACGAGTCGTCAGGCATCAAGGTTGG 717
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 712 CCAGAACATTCAGGATGGTGTCTTTGATGTATCCAACGAGTCATCAGGTATCAAGATTGG 771
Query 718 TTACGGGCGCACTCAAGGTGCAGCTGGAGGAAGAGATGGTACGATCTCTCAGGGAGGAGG 777
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 TTACGGGCGTACTCAAGGTGCAGCTGGAGGAAGAGATGGTACGATCTCTCAGGGAGGTGG 831
Query 778 CTGTTGTGGTTAAAAAATCCTCGAGAGAGGGTCACAGTCTCACATATCTGCTGTAATCTG 837
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 832 CTGTTGTGGTTAAAAAATCCTCGAGAGAGG-T----GTC--ACATATCTGCTGTAATCTG 884
Query 838 GTGATTCAGAAACTACTATTGCTTTTATTTACCTCTGCAAATGGATACACCAGAATGTAT 897
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 GTGATTCAGAAACTACTATTGCTTCTATTTACCTCTGCAAATGGATACACCAGAATGTAT 944
Query 898 AGTTTCTCtttttttttttCTT 919
||||||||||| ||| ||||||
Sbjct 945 AGTTTCTCTTTCTTTCTTTCTT 966
Score = 178 bits (96), Expect = 1e-43
Identities = 121/133 (91%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 913 ttttCTTAAAAACCCAAACCGGTGCATTTGAGAGTGAACAGCCTGATCTTTATAAACCAA 972
|||| | ||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 991 TTTTATCAAAAAACCAAACGGGTGCATTTAAGAGTGAACAGGCTGATCTTTATAAACCAA 1050
Query 973 ACAGGCGTTGGCTTATTTAAAACATTGTTGCTTTTGCATGAAGCTCTCAACGTTAAGCAA 1032
||||||||||||||||||||||| |||| ||||| | ||||||||||||| |||||| ||
Sbjct 1051 ACAGGCGTTGGCTTATTTAAAACGTTGTCGCTTT-GTATGAAGCTCTCAAGGTTAAGTAA 1109
Query 1033 TTGAAATCAAATC 1045
|||||||||||||
Sbjct 1110 TTGAAATCAAATC 1122
> AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:16983525-16986967 FORWARD LENGTH=1734
Length=1734
Score = 176 bits (95), Expect = 4e-43
Identities = 116/126 (92%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 920 AAAAACCCAAACCGGTGCATTTGAGAGTGAACAGCCTGATCTTTATAAACCAAACAGGCG 979
||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1731 AAAAAACCAAACGGGTGCATTTAAGAGTGAACAGGCTGATCTTTATAAACCAAACAGGCG 1672
Query 980 TTGGCTTATTTAAAACATTGTTGCTTTTGCATGAAGCTCTCAACGTTAAGCAATTGAAAT 1039
|||||||||||||||| |||| ||||| | ||||||||||||| |||||| |||||||||
Sbjct 1671 TTGGCTTATTTAAAACGTTGTCGCTTT-GTATGAAGCTCTCAAGGTTAAGTAATTGAAAT 1613
Query 1040 CAAATC 1045
||||||
Sbjct 1612 CAAATC 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5