BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491055
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4... 1360 0.0
> AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4:16980961-16982365
FORWARD LENGTH=932
Length=932
Score = 1360 bits (736), Expect = 0.0
Identities = 840/889 (94%), Gaps = 12/889 (1%)
Strand=Plus/Plus
Query 1 cttctatcttctttctcatctcttctctcttctcttGTATAAGCTCCACTGAGCTCTGTT 60
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CTTCTATCTTCTTTCTCTTC-CTTCTCTCTTCTCTTGTATAAACTCCACTGAGCTCTGTT 59
Query 61 TTCGTTTTTACCGTAGATTGTTTCGAGTCTCTTTCTCTATTCTTTGGAGGGTTCTGT--- 117
|| ||||||||||||||| |||||||||||| | | || ||||||| |||||| ||
Sbjct 60 TTTGTTTTTACCGTAGATCGTTTCGAGTCTC--T-T-TAATCTTTGGCGGGTTCCGTAAA 115
Query 118 -aaaaaaaTGGCATCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCTTC 176
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 116 AAAAAAAATGGCCTCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTC 175
Query 177 TCTTGGGAATTTCGTGGAAAGGATTAAAGACGCATGTCGTTTCACTCTCTCCGCTGTTCT 236
||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 176 TCTTGAGAATTTCATCGAAAGGATTAAAGACGCATGTCGTTTCACCCTCTCCGCTGTTCT 235
Query 237 AGGGACAATTCTCTCGGCGATCTTGACTTTCTTCTTCGCATTAGTGGGCACACTGCTTGG 296
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 236 AGGGACAATTCTCTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGG 295
Query 297 AGCACTTACTGGAGCCTTGATAGGCCAAGAAACCGAGAGTGGATTCATCCGAGGAGCAGC 356
||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||
Sbjct 296 AGCACTTACTGGAGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTTATCCGAGGAGCGGC 355
Query 357 AGTTGGAGCCATTTCAGGAGCTGTTTTCTCTATCGAAGTCTTTGAATCATCTCTTGTTCT 416
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 GGTTGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCT 415
Query 417 CTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTAAG 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 TTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAG 475
Query 477 TCTTATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGCGCTGTTCA 536
||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 476 TCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCA 535
Query 537 AAGTCAGATGGGAGCTGTGGATACAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGG 596
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGTCAGATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACCGG 595
Query 597 TGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGGCTCAAAGGGGTTAACAGGAGATTTGGTTGATAAAATACCTAAAATCAAAATCACTGG 655
Query 657 CAAAAACAACTTGGATGCTTCTGGCAACAAAGACTCGTGTTCTGTTTGTCTTCAGGATTT 716
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 656 CAAAAACAACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTT 715
Query 717 TCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCAACTTGGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTG 775
Query 777 CATAGACAATTGGCTATTCAGGCACGGATCTTGTCCAATGTGTAGACGTGATCTGTAAtc 836
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 CATAGACAATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAATC 835
Query 837 ttcttt-cttaccatttgcacagtctct-ccctctctcttcttcttctt 883
| |||| |||||||||||||||| |||| |||||||||| |||||||||
Sbjct 836 T-CTTTTCTTACCATTTGCACAGCCTCTTCCCTCTCTCTCCTTCTTCTT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5