BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491067
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35770.1 | Symbols: SEN1, ATSEN1, DIN1 | Rhodanese/Cell cycl... 1057 0.0
> AT4G35770.1 | Symbols: SEN1, ATSEN1, DIN1 | Rhodanese/Cell cycle
control phosphatase superfamily protein | chr4:16944941-16946192
FORWARD LENGTH=890
Length=890
Score = 1057 bits (572), Expect = 0.0
Identities = 696/751 (93%), Gaps = 27/751 (4%)
Strand=Plus/Plus
Query 1 GACATAAAACTTGCTGACGTGACACCCATACCTTTTGTGTCTGTATGTATTATATAAA-- 58
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GACATAAAACTTGCTGACGTGACACCCATACC-TTTGTGTCTGTATGTATTATATAAACG 59
Query 59 C----G--CT-AGAGAAG-AGTATCGAAGTAGCATCAAAGCATTCT------A-----AA 99
| | || ||||||| |||||| |||||||||||||||||||| | ||
Sbjct 60 CTATAGAACTAAGAGAAGAAGTATCTAAGTAGCATCAAAGCATTCTAAAAGAAGTTTCAA 119
Query 100 AGAAGAA--GAAAATGGAAACTACTGCCTTTAACACAACATCAAGAATTGGAAGCTGGTC 157
||||||| |||||||||||| ||||| ||||||||||||||| ||||||||| ||||||
Sbjct 120 AGAAGAAGTGAAAATGGAAACCACTGCTTTTAACACAACATCACGAATTGGAAACTGGTC 179
Query 158 ATCAGCTATTTCTCGACCTCTACAAACATGTAGATCTTTCAAGTGCCAATTACCAACACG 217
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 ATCGGCTATTTCTCCACCTCTACAAACATGTGGATCTTTCAAGTGCCAATTACCAACACG 239
Query 218 AAGAGGTGTTATTGTAGCTGATCTTCGAAACTCCAACTTCCGATGGAGGAAAGCAGCAAC 277
||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 240 AAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGGAGG-AA--AGCAAC 296
Query 278 AACAACAAGCAGAGGGAATGTTTCAACAGAGGCAGTTAAAATTCCTACGTCAGTACCAGT 337
|||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 297 GACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTAAAATTCCTACGTCAGTACCAGT 356
Query 338 AAGAGTGGCGCGTGAGCTAGCTCAAGCAGGATACCGGTATCTCGACGTTAGGACACCAGA 397
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 357 AAGAGTGGCGCGTGAGCTAGCTCAAGCAGGATACCGCTATCTCGACGTGAGGACACCAGA 416
Query 398 CGAATTCAGCATCGGACACCCAACTAGAGCCATCAACGTACCTTACACGTACAGAGTCGG 457
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 417 CGAATTCAGCATCGGACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGG 476
Query 458 ATCAGGAATGGTTAAGAACCCGAGTTTTCTAAGGCAGGTCTCGTCCCACTTCAGGAAACA 517
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 ATCAGGAATGGTTAAGAACCCGAGTTTTCTAAGACAGGTCTCGTCCCACTTCAGGAAACA 536
Query 518 CGACGAAATCATCATCGGTTGTGAGAGCGGTCAAATGTCATTCATGGCTTCAACTGATCT 577
||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 537 CGATGAAATCATAATCGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCT 596
Query 578 TCTCACTGCTGGCTTCACGGCGATCACAGACATTGCTGGAGGATACGTCGCTTGGACAGA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTCACTGCTGGCTTCACGGCGATCACAGACATTGCTGGAGGATACGTCGCTTGGACAGA 656
Query 638 GAATGAGCTGCCGGTAGAAGAGTGACAACAAACATAACCGTATCACCTCCTGTAATTATC 697
||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||
Sbjct 657 GAATGAGCTGCCGGTAGAAGAGTGAAAACAATCATAGCCATATCACCTCCTGTAATTATC 716
Query 698 AATAAATTCTGTAGATGTTCTCAATGCAAGT 728
|||||||||||||||||||||||| ||||||
Sbjct 717 AATAAATTCTGTAGATGTTCTCAACGCAAGT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5