BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491070
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35760.1 | Symbols: | NAD(P)H dehydrogenase (quinone)s | ch... 2143 0.0
> AT4G35760.1 | Symbols: | NAD(P)H dehydrogenase (quinone)s |
chr4:16942321-16944677 REVERSE LENGTH=1598
Length=1598
Score = 2143 bits (1160), Expect = 0.0
Identities = 1306/1377 (95%), Gaps = 8/1377 (1%)
Strand=Plus/Plus
Query 2 AGAAGATGAAGTTATCAACGGTGGAATAGCGATTCTTCGACGACGATGATGGCGAGGTTT 61
||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AGATGATGAAGTTAACAATGGTGGAATAGCGATTCTTCGACGACGATGATGGCGAGGTTT 70
Query 62 GTTTCTGTGTCGTCTTGTCAGTTTCATTTCGGCTTCCGTGAGGTTCCTCCTCCGTCGGTA 121
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 71 GTTTCTGTGTCGTCTTGTCAGTTTCATTTCGGCTTCCGTGAGGTTTCTCCTCCGTCGGTA 130
Query 122 ACTTCTTATCCGAGACGATTCGAGGTCTCTGATCGGAGATTTCCTGCGATTTCGATCAAA 181
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 131 ACTTCTTATCCTAGACGATTCGAGGTCTCTGATCGGAGATTTCCTGCGATTCCGATTAAA 190
Query 182 TGTTCTTCATCTGAGCCGGAAAATGGTGAGGATTCGGCGCCGTCGCTGTCTTCCTCCTCA 241
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 191 TGTTCTTCATCTGAGCCGGAAAACGGTGAGGATTCGGCACCGTCGCTGTCTTCCTCCTCC 250
Query 242 TCGTCGTCTACAAGTGAAGTATCTACTAGTGACAGTTCGACATACAACTGGTACACTGGA 301
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 251 TCATCGTCTACAAGTGAAGTATCTACTAGTAACAGTTCGACATACAACTGGTACACCGGA 310
Query 302 ATCGGTGGTATTGGAATGTTAGACACTGCGTATTTGACTTACCTCAAGGTCACTGGCTCC 361
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATCGGCGGTATTGGGATGTTAGACACTGCGTATTTGACTTACCTCAAGGTCACTGGCTCC 370
Query 362 GATGCGTTTTGCCCGATTGGTGGTGGCACTTGCGGCGATGTCCTGAACAGCGATTATGCA 421
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 371 GATGCGTTTTGCCCTATTGGTGGTGGCACTTGCGGTGATGTCCTCAACAGCGATTATGCC 430
Query 422 GTCGTTTTCGGTGTTCCTCTCCCAGTGATTGGATTTGTCATGTATGGCTTAGTAACTGCT 481
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 431 GTCGTTTTCGGTGTTCCTCTTCCAGTGATTGGATTTGTTATGTATGGCGTAGTAACCGCT 490
Query 482 CTAAGCGCAGAGCTTGGGGAAGGGAATCTGCCTTTTGGAATCAGTAAGACCAATGGGCGT 541
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 491 CTAAGTGCAGAGCTTGGGGAAGGGAATCTACCTTTTGGAATCAGTAAGAGCAATGGGCGT 550
Query 542 TTCGCGTTATTTGGGATCACGACTGCAATGGCATCTGCTAGTGCATATTTCCTGTATATC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTCGCGTTATTTGGGATCACGACTGCAATGGCATCTGCTAGTGCATATTTCCTGTATATC 610
Query 602 CTTAGTACAAAACTCTCAGGATCATCATGTCTGTATTGTCTGGTGTCTGCTTTCTTATCA 661
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 611 CTTAGCACAAAACTCTCAGGATCATCATGCCTGTATTGTCTGGTGTCTGCTTTCTTATCA 670
Query 662 TTTACTCTATTTTTCCTCTCTTTAAAGGATGTGAAATTGCAAGAAATACAGCAAGTTGTT 721
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 671 TTTAGTCTATTTTTCCTCTCTGTAAAGGATGTGAAGTTGCAAGAAATACAGCAAGTTGTA 730
Query 722 GGATTGCAGATATGCTTAGCAATCATAGTAGTTGCCTCCTTGACTGCTTCTTACAGTACT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GGATTGCAGATATGCTTAGCAATCATAGTAGTTGCCTCCTTGACTGCTTCTTACAGTACT 790
Query 782 GCTCAACCAATCCCTTCACGCTCTGGTGACATTGAACTGCCATATTTTAGAACAGAGATC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GCTCAACCAATCCCTTCACGCTCTGGTGACATTGAACTGCCATATTTTAGAACAGAGATC 850
Query 842 AGTTCATCATCGAGCCCTTATGGTATTGCTTTAGCGAAACATCTAAACTCCATTGGAGCT 901
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 851 AGTTCATCATCGAGCCCTTATGCTATTGCTTTAGCAAAACATCTAAACTCCATTGGAGCT 910
Query 902 AAAATGTATGGGGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGATGTTTGGAAGA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AAAATGTATGGGGCATTCTGGTGTTCTCACTGCTTAGAGCAAAAAGAGATGTTTGGAAGA 970
Query 962 GAAGCGGCAAAACAACTGAACTACGTGGAATGTTTTCCTGATGGATATAAGAAAGGAACT 1021
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 971 GAAGCGGCAAAAGAACTGAACTACGTGGAATGTTTTCCGGATGGATATAAGAAAGGAACT 1030
Query 1022 AAGATACTCAAGGCATGTGCAGATGCTGGGATCGAAGGATTCCCAACATGGATAATAAAT 1081
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1031 AAGATACTCAAGGCATGTGCAGATGCTGCGATCGAAGGATTCCCAACATGGATAATAAAT 1090
Query 1082 GATCAGGTCTTAAGCGGAGAAATAGAACTCGCTGAACTAGCAGAAATGTCTGGATTCAGC 1141
||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1091 GATAAGGTCTTAAGCGGAGAAATAGAACTCGCTGAACTAGCGGAGATGACTGGATTCAGC 1150
Query 1142 CTTGATCAGGCAAATGCGGCCAATCAACTTCAGTAAATTTTGTATTGTTGCAGAAAATAT 1201
|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1151 CTTGATCAGGCAAATGAGACCAATCAACTTCAGTAAATTTTGTATTGGTGCAGAAAATAT 1210
Query 1202 TAAGGTGAATCCGTAAATGTTCTTTGCTTGATCCG--TAA-A--TATAGGGTATTCTATA 1256
||||||||||||||||||||| ||| |||||||| | | | |||||||| |||||||
Sbjct 1211 TAAGGTGAATCCGTAAATGTTGTTTACTTGATCCTCCTGATAGCTATAGGGTGTTCTATA 1270
Query 1257 GAAATGCAAGTGATTAAAGTACTTATTGTTGCCATAGGAGGTCATTACTTCATGTATATC 1316
|||| ||||| || ||||| ||||||||||||||||||||| | ||||||| | ||||
Sbjct 1271 CAAATTCAAGTAATGAAAGTGCTTATTGTTGCCATAGGAGGTTACAACTTCATCTGTATC 1330
Query 1317 TCTTAGCCTACTACACCTGAGCATCACTATTTTATCGTTGAAAGATTCATAGGTTCT 1373
|||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1331 ACTTAGCCTAC-AC-CA-GAGCATCACTATTTTATAATTGAAAGATTCATAGGTTCT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5