BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491071
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35750.1 | Symbols: | SEC14 cytosolic factor family protein... 1432 0.0
> AT4G35750.1 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr4:16940507-16941862
REVERSE LENGTH=1155
Length=1155
Score = 1432 bits (775), Expect = 0.0
Identities = 1048/1167 (90%), Gaps = 70/1167 (6%)
Strand=Plus/Plus
Query 1 AAGAGCCCGTCGTTTCTCCCATTACCCTCCAATTAATACACTA-GTAttttccttttttg 59
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 1 AAGAGCCCGTCGTTTCTCCCATTACCCTCCAATTAATACACTATTTTTTTTATTTTTTTG 60
Query 60 tctttccctttttAAAATGATCATCA---TCTTCTTCACTCGCCTC-ATTTGTTGTTCCC 115
|||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||
Sbjct 61 TCTTTCCCTTTTTAAAATGATCATCATCTTCTTCTTCACTCGCCTCAATTT-TTGTT-CC 118
Query 116 TTCTTCTTCTTCTGTAATTCAACTGTGAATTTCACCGACGAAAC-----------A-AGA 163
||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 119 --CTTCTTCTTCTATAATTCAACTGTGAATTTCACCGACGAAACAAAAAAGAGAGAGAGA 176
Query 164 GATTGAGAAACGATGAGTTCTCAGATTTCGGAGATCGAACAAGAGCAGCTTATCGAGAAG 223
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 177 GAGAGAGAAACGATGAGTTCTCAGATTTCGGAGATTGAACAAGAGCAGCTGATCGAGAAG 236
Query 224 CTTCAGATCTTCAAGATCCATGGCAGAGACAAACGTGGCCGTAAGATCCTTCGTATTATC 283
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTGAGATCTTCAAGATCCATGGCAGAGACAAACGTGGCCGTAAGATCCTTCGTATTATC 296
Query 284 GGCAAATTCTTCCCAGCTCGATTTCTGTCACTGGATGTGTTAAAGAAGTATCTAGAGGAG 343
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 GGAAAATTCTTCCCAGCTCGATTTCTGTCACTGGATGTGTTGAAGAAGTATCTAGAGGAG 356
Query 344 AAGATCTTTCCTCGATTAGGTAGAAAACCATTCGCCGTACTTTACGTCCACACCGGTGTA 403
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 357 AAGATATTTCCTCGATTAGGTAGAAAACCATTCGCCGTACTCTACGTCCACACCGGCGTA 416
Query 404 CAGAGGAGCGAGAATTTCCCCGGAATCTCAGCTCTTA-GAGCGATCTACGACGCGATTCC 462
||||| |||||||| ||||| || |||||||||| || |||||||||||||||| |||||
Sbjct 417 CAGAGAAGCGAGAACTTCCCAGGTATCTCAGCTC-TACGAGCGATCTACGACGCAATTCC 475
Query 463 GGTCAACGTCAGAGACAATCTCCAGGAGGTTTACTTTCTGCATCCAGGTCTTCAATCACG 522
||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 476 GGTAAACGTCAGAGACAATCTTCAGGAGGTTTACTTCCTCCATCCAGGTCTTCAATCACG 535
Query 523 TCTCTTCCTCGCCACTTGCGGCCGATTTCTCTTCTCCGGCGGGTTGTACGGGAAGCTGAG 582
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 536 TCTCTTCCTCGCCACCTGCGGCCGATTTCTATTTTCCGGCGGGTTGTACGGGAAGCTGAG 595
Query 583 GTACATAAGCAGAGTTGATTATCTGTGGGAACATGTGAGGAGGAACGAGATAGAGATGCC 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 GTACATAAGCAGAGTTGATTATCTGTGGGAACATGTGAGGAGGAATGAGATAGAGATGCC 655
Query 643 GGAGTTTGTGTACGATCACGATGATGATTTGGAGTATCGTCCGATGATGGATTACGGTCA 702
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 656 GGAGTTTGTATACGATCACGATGATGATCTGGAGTATCGTCCGATGATGGATTACGGTCA 715
Query 703 AGAGAGCGACCACGCTAGAGTTTTCGCCGGAGCCACCGTGGATTCATCAGTCTCAAGTTT 762
||| ||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 AGAAAGCGATCACGCGAGGGTTTTCGCCGGAGCCGCCGTGGATTCATCAGTCTCAAGTTT 775
Query 763 CTCCATGAGGTGTATCTCATAGCGTAAAAGGCTAAAACTCCACCACCCACTACAGAATGA 822
|||||||||||||||||||||||||||||||||||||||||||| | |||| || | |
Sbjct 776 CTCCATGAGGTGTATCTCATAGCGTAAAAGGCTAAAACTCCACC-C--ACTA--GA-T-A 828
Query 823 TATCGGATCGTATCTtataaaccatataatcatataatatacgattaataatatatGAAA 882
| ||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||
Sbjct 829 T--CGGATCGTATCTTATAAACCATATAAT-ATACGA-ATACGATTAATAATATATCAAA 884
Query 883 AAGATTGCAAATACAGTAGGTGTGCTTTTTCAAA--AGTGAGCGTTTTTTATGGAAAAGA 940
||||||| ||||| | | |||||||||| ||| ||||||||||||||||||||||||
Sbjct 885 AAGATTGGAAATA--G--G-TGTGCTTTTTGAAATTAGTGAGCGTTTTTTATGGAAAAGA 939
Query 941 AAAGAAA-G----CAGTTGGCGTTTGGATAA-GGGAAAGGGGGAGAATCtttagattttt 994
||||||| | |||||||||| ||||||| ||||| || |||||||||||||||||||
Sbjct 940 AAAGAAAAGAAAGCAGTTGGCGTCTGGATAAAGGGAA-GGAGGAGAATCTTTAGATTTTT 998
Query 995 tcttaaatat-ttttt-ttt-gtcttaattaatttttttttctttAGTGGTGGTGGACCT 1051
|||| ||| | ||||| ||| ||||| |||| |||||| ||||||||||||||| |
Sbjct 999 TCTTTAATCTGTTTTTCTTTTGTCTTGATTAGTTTTTT---CTTTAGTGGTGGTGG---T 1052
Query 1052 GGTGGTTGTGAGTTTAGTGTGGAAAATGTATATGGGAAATGTCATATGTGAATATAATAA 1111
|| | | |||| |||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1053 --TG-T-G--AGTT-AGTGTGTAAAATGTATAT------TGTCATATGTGAATTTAATAA 1099
Query 1112 TAAGTCCTTTTGTAAGATGATTAAGGG 1138
||||||||||||||||||||| |||||
Sbjct 1100 TAAGTCCTTTTGTAAGATGATCAAGGG 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5