BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491073
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA heli... 3138 0.0
> AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936120-16940332 FORWARD LENGTH=2415
Length=2415
Score = 3138 bits (1699), Expect = 0.0
Identities = 1945/2058 (95%), Gaps = 40/2058 (2%)
Strand=Plus/Plus
Query 432 GCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GCTTTGATGGAAAATCAAGTAATGGCGCTGAAGGAGAAAGGTATTGCTGCTGAGTATCTC 431
Query 492 TCATCTACCCAAGCTACGCATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAA 551
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCATCTACCCAAGCTACACATGTTAAGAACAAGATCCATGAAGACCTTGATTCTGGAAAA 491
Query 552 CCCTCTGTAAGATTGCTGTATGTTACTCCAGAATTGATCGCAACTAAAGGATTTATGTTG 611
||||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 492 CCCTCAGTAAGATTGCTGTATGTTACTCCAGAATTGATTGCGACGAAAGGGTTTATGTTG 551
Query 612 AAGCTGAGAAAACTCCATTCCAGAGGTTTGCTATATCTTATAGCTATAGACGAGGCACAT 671
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 552 AAGCTGAGAAAACTCCATTCCAGGGGTTTGCTAAATCTTATAGCTATAGACGAGGCGCAT 611
Query 672 TGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TGCATCTCATCATGGGGCCACGACTTCAGACCTAGTTATCGTCAACTTTCAACCTTGAGA 671
Query 732 GATTCTTTGGCAGATGTTCCAGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAGGTACAA 791
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 672 GATTCTTTGGCAGATGTTCCGGTGTTGGCTCTAACTGCTACTGCTGCTCCCAAAGTACAA 731
Query 792 AAGGATGTTATCGACTCATTGAATTTGCAGAATCCTTTGGTCCTCAAGTCTTCGTTCAAT 851
||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 732 AAGGATGTTATCGACTCCTTGAATTTGCGGAATCCTTTGGTCCTCAAGTCTTCTTTCAAT 791
Query 852 CGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTGGATAATGCTTATACTGAT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CGCCCAAATATCTTCTATGAAGTTCGTTACAAAGATCTTTTGGATAATGCTTATACTGAT 851
Query 912 TTGGGAAACTTGCTCAAGTCATGTGGAAATATTTGTGCGATTATCTATTGCCTTGAGCGT 971
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 852 TTGGGCAACTTGCTCAAGTCATGTGGAAATATTTGTGCAATTATCTATTGCCTTGAGCGT 911
Query 972 ACAACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATCTCTTCTTCAGCCTAT 1031
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 912 ACAACCTGTGATGACTTGTCTGTTCATCTTTCCAGTATTGGGATTTCTTCTGCGGCCTAT 971
Query 1032 CATGCAGGACTCAATAGCAAACTAAGGAGTACTGTTTTAGATGATTGGCTGTCCTCGAAG 1091
||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||
Sbjct 972 CATGCAGGACTCAATAGTAAAATGAGGAGTACTGTTTTAGATGATTGGCTGTCCTCCAAG 1031
Query 1092 AAGCAAATTATTGTTGCCACTGTGGCTTTCGGCTCGATGGGGCACGTGGGCATAGATAAG 1151
|||||||||||||||||||| ||||||||| | || | ||||||||||||||
Sbjct 1032 AAGCAAATTATTGTTGCCACAGTGGCTTTC-G---GA------A--TGGGCATAGATAAG 1079
Query 1152 AAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGGATGTCAGAATGGTTTGCCATTTTAACATTCCAAAATCAATGGAATCTTTCTATCAA 1139
Query 1212 GAGTCTGGTAGAGCAGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGTCTGGTAGAGCAGGTCGGGATCAATTACCTTCAAGAAGTGTATTATACTATGGTGTA 1199
Query 1272 GATGACAGAAAGAAAATGGAATATCTTCTGCGGAATTCGGAGAATAAGAAATCCCCATCC 1331
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 GATGACAGAAAGAAAATGGAATATCTTCTGCGGAATTCGGAGAATAAGAAATCCTCATCC 1259
Query 1332 TCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCTGGATGC 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCTAAGAAGCCTACATCTGACTTTGAACAGATTGTGACGTACTGCGAAGGTTCTGGATGC 1319
Query 1392 CGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCACTGCaaaaaa 1451
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1320 CGAAGAAAAAAGATTCTTGAGAGCTTTGGTGAAGAGTTTCCTGTGCAGCAATGCAAAAAA 1379
Query 1452 aCGTGTGATGCATGTAAGTATCCAAATCAAGTTGCTCATTGCTTGGAGGAGCTCATGACC 1511
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1380 ACGTGTGATGCATGTAAGCATCCTAATCAAGTTGCTCATTGCTTGGAGGAGCTTATGACC 1439
Query 1512 ACCGCCTCCCGAAGACACAATTCTTCTCGAATTTTCATCACCAGCTCGAACAATAAGACC 1571
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACTGCCTCCCGAAGACACAATTCTTCTCGAATTTTCATCACCAGCTCGAACAATAAGACC 1499
Query 1572 AATGAGGGACAGTACTCTGAATTCTGGAATCGTAATGAAGATGGAAGCAATTCCGATGAG 1631
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 AATGAGGGACAGTACTCTGAGTTCTGGAATCGTAATGAAGATGGAAGCAATTCCAATGAG 1559
Query 1632 GAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAAGAGCCTAGCAGGACCTAAACTA 1691
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 1560 GAAATATCAGATTCAGATGATGCCACTGAGGCTGCCAATAGCGTAACAGGACCTAAACTA 1619
Query 1692 TCGAAAAAGTTGGGACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTAC 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCGAAAAAGTTGGGACTAGACGAGAAATTGGTTTTACTGGAGCAAGCTGAGGAAAAGTAC 1679
Query 1752 TACGAAAGGAACAAACAGGTCAAAAAGTCCGAGAAGAATGCAATATCTGAAGCACTAAGG 1811
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1680 TACGAAAGGAATAAACAGGTCAAAAAGTCAGAGAAGAATGCAATATCTGAAGCCCTAAGG 1739
Query 1812 GATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTCGCCAGT 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1740 GATTCGAGCAAGCAGAGACTCTTGGATGCGTTGACACGAGTACTTCAGCTGCTTGCCTGT 1799
Query 1872 GTAGAGGAGATTGATTCCCAGAAAGGATCTGAGTTTCTTGAAAATGAGTGCTATAGAAAA 1931
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1800 GTGGAGGAGATTGATTCCCAGAAAGGATCCGAGTTTCTTGAAAATGAGTGCTATCGAAAA 1859
Query 1932 TATAGCAAAGCAGGAAAAACGTTTTACTACTCGCAGATAGCGAGTACAGTGAGATGGCTA 1991
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1860 TATAGCAAAGCAGGGAAATCGTTTTACTACTCGCAGATAGCGAGTACTGTGAGATGGCTA 1919
Query 1992 GGAACTGCAAGCAGAGATGAACTAATGACCCGACTTAGCTCAGTGGTCAGTTTGGCTAGA 2051
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1920 GGAACCGCAAGCAGAGATGAGCTAATGACCCGACTTAGCTCAGTGGTCAGTTTGGCTAGA 1979
Query 2052 GAACAAGAGCCATTAGAAGAGCCGTTGCTGG-TGACTGAACCAGCGGAGAACATAGAGGA 2110
|| |||||||||||||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct 1980 GAGCAAGAGCCATTAGAAGAGCCGTTGCTGGCT-ACTGAACCGGTGGAGAACATAGAGGA 2038
Query 2111 AGAAAATGATGGTAACACTAACACGGTCGAGTCATGGGTGGATGAACCGACACAAGAGCT 2170
|||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2039 AGAAGATGATGGTAAGACTAACACGGTCGAGTCAAGGGTTGATGAACCGACACAAGAGCT 2098
Query 2171 AGTGGTGAGTCCGATCCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTT 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 AGTGGTGAGTCCGATCCTTTCGCCTATAAGGCTTCCACAAGTTCCATCATTCTCAGAGTT 2158
Query 2231 TGTTAACCGGAGAAAGATGAAACAAAACACATCGATAGATAAATCTTATGAAGGATTTGA 2290
||||||||||||||| || ||||||||||||| |||||||||||||| |||||| |||||
Sbjct 2159 TGTTAACCGGAGAAAAATAAAACAAAACACATTGATAGATAAATCTTCTGAAGGTTTTGA 2218
Query 2291 TGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAAATTGT--T-TACTAG-CCAAAAA 2346
||||||||||||||||||||||||||||||||||||||| | | ||| || |
Sbjct 2219 TGACAAGAAACCGGCAAAGATAATGAAGCTTCAATAAATAAAAATGTGCTAAACCCTCA- 2277
Query 2347 CGtttttt-tt---t--CCAA-----TTT---C---TTT--T--GTAGTTTAGCTTTAGC 2385
|| ||||| || | |||| ||| | ||| | ||||||||||||||||
Sbjct 2278 CGATTTTTGTTCACTAGCCAAAAACGTTTTTTCCAGTTTCATTTGTAGTTTAGCTTTAGC 2337
Query 2386 ATTGGCCCATTTGTCTGTTAAAGTCGTAACATACACAATACTTAGTGTTCCACCTGATTG 2445
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2338 ATTGGCCCATTTGTCTCTTAAAGTCGTAACATACACAATAATTAGTATTCCACCTGATTG 2397
Query 2446 AATAGACTTACTGATGGT 2463
|||||||||||||| |||
Sbjct 2398 AATAGACTTACTGAAGGT 2415
Score = 508 bits (275), Expect = 8e-143
Identities = 305/319 (96%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 34 AAATATCGTCTCTACAAATTTGTTAGTTTCGTCGAGACGTTGAATAGGTGAAT-ATAGAT 92
|||||||||||||| |||||| |||||||| || || ||||| ||||||| || | ||||
Sbjct 56 AAATATCGTCTCTAAAAATTTTTTAGTTTCCTCCAGGCGTTG-ATAGGTG-ATCAGAGAT 113
Query 93 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCACAGCTCCGATAAGAACGTTGCCGGA 152
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 114 ATGAAGAAATCGCCGTTGCCGGTGCAGAATGTGCAGAGCTCCGATAAGAACGTTGCCGGA 173
Query 153 AAAGAAGCATTGGTGAAGCTTTTGAGATGGCATTTCGGTCACGCAGATTTCAGAGGGAAG 212
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 174 AAAGAAGCATTGGTGAAGCTTTTGAGATGGCATTTCGGTCATGCAGATTTCAGAGGGAAG 233
Query 213 CAATTGGAGGCTATTCAAGCTGTTGTCTCTGGAAGGGATTGCTTTTGCTTGATGCCTACG 272
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 234 CAATTGGAGGCTATTCAAGCTGTTGTATCTGGAAGGGATTGCTTTTGCTTGATGCCAACG 293
Query 273 GAAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT 332
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTT 353
Query 333 GTTGTGTCTCCTTTGATTG 351
|||||||||||||||||||
Sbjct 354 GTTGTGTCTCCTTTGATTG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122206673148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5