BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491074
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35733.1 | Symbols: | F-box family protein with a domain of... 1537 0.0
AT3G25750.1 | Symbols: | F-box family protein with a domain of... 202 6e-51
AT2G26160.1 | Symbols: | F-box family protein with a domain of... 130 3e-29
> AT4G35733.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:16934236-16935502 FORWARD
LENGTH=1181
Length=1181
Score = 1537 bits (832), Expect = 0.0
Identities = 1007/1089 (92%), Gaps = 21/1089 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGAAGTGATCGTGTGGTCTGATTTACCCGGAGACCTCCTCGATCATATAGCCAAC 60
|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 105 ATGAGTGAAGCCACCGTGTGGTCTGATTTACCCGGAGAACTCCTCGATCATATAGCCAAC 164
Query 61 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGGTTCCGTAGCATCTGCAAAACCTGCCGTTCT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 165 GGTCTCTTCTCCAAAGTCGAGCTTCTCCGATTCCGTAGCATCTGCAAAACCTTCCGTTCT 224
Query 121 GCGGTTGCGA-T-CAACAAGAGTTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 178
|||||| || | | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 225 GCGGTT--GACTCCGACAAGAATTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTC 282
Query 179 TTTCTCCTTACAGTATTGGTAAAACGTGTTCACTTTCTCCCGCACCTTTCTATCGTGTGG 238
| ||||||||||||| ||||||||||||||| || ||||||||| |||||||||| ||||
Sbjct 283 TCTCTCCTTACAGTACTGGTAAAACGTGTTCGCTCTCTCCCGCAGCTTTCTATCGAGTGG 342
Query 239 TTCTCTCGTCATGTCCGGACAAAGGATGGCTTATCAAAATTCAAGATGTCTATGTCTCCT 298
|||| ||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 343 TTCTGTCGTCATATCCGGACAAAGGATGGCTTATCAAACTCCAAGATGCCTATGTCTCCT 402
Query 299 CTCAAAAGCAACTCCTTTCTCCTCTCTCTCGTTTCTCGATAAAATCTTCCGGCCAAACCC 358
|||||||||| |||||||||||||||||||||||||| || ||||| || ||| ||||||
Sbjct 403 CTCAAAAGCAGCTCCTTTCTCCTCTCTCTCGTTTCTCCATCAAATCATCTGGCAAAACCC 462
Query 359 TAGATCTCTTGGAGTTCACGGTTACAGAGATGCATCAATCTTACGACGTGGAATAC-T-T 416
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |
Sbjct 463 TAGATCTCTTGGAGTTCACGGTTTCAGAGATTCATCAATCTTACGACGTGGAATACTTAT 522
Query 417 A-TATAATTCGACAAGAACATCGTTTAATTTCGCTAGAGTTGTTCTATTAGAGGACTTGG 475
| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 523 ATTATAATTCGACTAGAGCATCGTTTAATTTCGCTAGAGTTGTTCTAGCAGAGGACTTTG 582
Query 476 TTTTCGTAGTTGATTACTACAAGAAAATCTGGTGGTGCAATAGTAACGAAAGTGATAATC 535
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 583 TTTTCATAGTTGATAACTACAAGAAAATCTGGTTGTGCAATAGTAACGAAAGTGATAGTC 642
Query 536 AGTGGGCAAGAGTCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 595
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATTGGGTAAGAATCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAG 702
Query 596 GTTATATGTATGCCTTAGACTTAAAAGGCGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 655
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 703 GTTATATGTATGCCTTAGACTTAACAGGAGCAGTTTGGTGGATTAGTTTATCTGAGTTTG 762
Query 656 AAATATTTCAATACGGACCTTCAA---CTCCACTGGACTACTATGACATTGAT-ACTTGC 711
||||||||||| ||||||||||| ||||| ||||||||| |||||||||| | | ||
Sbjct 763 GAATATTTCAATTCGGACCTTCAAGTACTCCAATGGACTACTGTGACATTGATGAGT-GC 821
Query 712 AAAGACAAGAGGTTTGTGGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTGTAGG 771
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 822 AAAGACAAGAGGTTCGTTGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTCTAGG 881
Query 772 AAATTTCGCCTAAAGCGAGTTGATATCGATATAACCGTTGGTTTTAAGGTTTATAAGATG 831
||||||||| |||||||||||||||| ||||| || |||||||| |||||||||||||||
Sbjct 882 AAATTTCGCATAAAGCGAGTTGATATAGATATGACAGTTGGTTTCAAGGTTTATAAGATG 941
Query 832 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGGGATAAGGCTTTTGTGATG 891
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 942 GACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGAGATAAGGCTTTTGTGATG 1001
Query 892 GCTACAGATAGTTGCTTCACTGTCTTGGCTAGAGAGTATTATGGATGTTTGGAGAATTCG 951
|||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 1002 GCTACAGATAGTTGTTTCTCTGTCTTGGCGAGAGAGTACTATGGATGTTTGGAGAATTCG 1061
Query 952 ATCTATTTTACTGACGAGGAAGAGCGAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1011
||||||||||| | ||| || | | |||||||||||||||||||||||||||||||
Sbjct 1062 ATCTATTTTAC--A-GAGCAA-A---A--CAATGTTAAAGTGTTCAAGCTTGGTGATGGT 1112
Query 1012 AGTATCACTAAGATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1071
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 AGTATCACTAACATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCT 1172
Query 1072 TTAGTTTGA 1080
|||||||||
Sbjct 1173 TTAGTTTGA 1181
> AT3G25750.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr3:9400955-9402088 FORWARD
LENGTH=1047
Length=1047
Score = 202 bits (109), Expect = 6e-51
Identities = 388/514 (75%), Gaps = 54/514 (11%)
Strand=Plus/Plus
Query 570 TTTCTCGGATATTGTATTTCACAAAGGTTATATGTATGCCTTAGACTTAAAAGGCGCAGT 629
||||||||| ||| || |||||| || ||| |||||| | ||||||||||| ||| |
Sbjct 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596
Query 630 TTGGTGGATTAGTTTATCTGAGTTTGA-AATAT-TTCAATACGGAC--CTTCAACTCCAC 685
|||||||||||||||||| || || | || | ||| | || ||| ||||||||||
Sbjct 597 TTGGTGGATTAGTTTATCACAGCTT-ACCAT-TGTTC-A-ACAGACATCTTCAACTCCGT 652
Query 686 TGGACTACTATGACAT-TGATACTTGCAAAGACAAGAGGTTTGTGGAGTATTGCGGAGAT 744
||||||||||| | || ||||| |||| |||||| |||| | ||||| ||||| ||||||
Sbjct 653 TGGACTACTAT-AAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGAT 711
Query 745 CTATGCATTGTTCATCGATTTTGTAGGA-AATTTCGCCTAAAGCGAGTTGATATCGATAT 803
||||||||||||||| || | ||| | || ||| || | | ||||| | |
Sbjct 712 CTATGCATTGTTCAT-GA-ACT-TAGCATAA-CTCG----AA---A--TCATATCCAGAG 758
Query 804 AACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGAATTGGTTGAATATGTTGAGGTTAA 863
||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 759 GACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTA- 817
Query 864 GT--CTTTGGGGGATAAGGCT-T--TTGT-GATGGCTACAGATAGTTGCTTCACTGTCTT 917
|| ||| ||| || || | | |||| | | || |||| | ||| || |||||| |
Sbjct 818 GTTGCTT-GGGAGACAACACACTCATTGTTGCTTGCAACAGTT-GTT--TT-ACTGTCGT 872
Query 918 GGC-TAGAGAGTATTATGGATGTTTGGAGAATTCGATCTA-TT-T-T-ACTGACGAGG-- 970
|| | ||||| ||||||||||| ||||||| || || || | | | | | || |
Sbjct 873 AGCCTCT-GAGTACCATGGATGTTTGAAGAATTCTATTTACTTCTCTTATT-ATGATGTC 930
Query 971 AAGA-G-C-GAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGTAGTATCACTAAGATGG 1027
|||| | | |||| | | | |||||||||||||||| ||||||||||||||| ||| ||
Sbjct 931 AAGAAGGCCGAAA-A-TATAAAAGTGTTCAAGCTTGATGATGGTAGTATCACCCAGA-GG 987
Query 1028 T-TGAT-TCTTCTTTTCAGAGTTGTTTTCAGATG 1059
|||| | ||||| ||||||||||||||| |||
Sbjct 988 ACTGATAT-TTCTTCTCAGAGTTGTTTTCACATG 1020
> AT2G26160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:11137978-11139451 REVERSE
LENGTH=1474
Length=1474
Score = 130 bits (70), Expect = 3e-29
Identities = 298/406 (73%), Gaps = 24/406 (6%)
Strand=Plus/Plus
Query 560 AAGTTAAACTTTTCTCGGATATTGTATTTCACAAAGGTTATA-TGTATGCCTTAGACTTA 618
||||| || ||||| ||| ||| || |||| ||||| | | | |||||||||||| ||
Sbjct 560 AAGTTGAAGATTTCTTGGACATTATACTTCATAAAGGACA-AGTCTATGCCTTAGACCTA 618
Query 619 AAAGGCGCAGTTTGGTGGATTAGTTTATCTGAGTTTGA-AATATTTCAATACGGACCTTC 677
| |||||| ||||||||||||||||||| | | | | |||||| | ||||||
Sbjct 619 ACCGGCGCAATTTGGTGGATTAGTTTATCACCG-CTCAGCCTCCTTCAATTCACACCTTC 677
Query 678 AACTCCACTGGACTACTA-TGACATTGATACTTGCAAAGACAAGAGGTTTGTGGAGTATT 736
|| |||| |||||||| | || | ||||| |||| | ||||||| | || |||||||
Sbjct 678 AATTCCAATGGACTACGACGGATA-TGATAGTTGC--A-ACAAGAGACTCGTTGAGTATT 733
Query 737 GCGGAGATCTATGCATTGTTCATCGATTTTGTAGGAAATTTCGCCTA-AAGCG-AGTTGA 794
| ||||||||||||||| |||||| | || | ||| || || | || || ||
Sbjct 734 GTGGAGATCTATGCATTATTCATCAACTTCG-CTTAAAGAAAGCTTATATCCGAAG--GA 790
Query 795 TATCGATATAACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGAAT-TGGTTGAATATG 853
|| | | || |||||||||||||||||||||||||||||| | | ||| ||| |
Sbjct 791 -GTC-AAAGGACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTA-TGTGGCAAAATGGG 847
Query 854 TTGAGGTTAAGTCTTTGGGGGATAAGGCTTTTGT-GATGGCTACAGATAGTTGCTTCACT 912
||||||||| ||| ||||| || ||||| | | | |||||| || ||||| || |||
Sbjct 848 TTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATTG-TGGCTAGGGACAGTTGTTTTACT 906
Query 913 GTCT-TGGC-TAGAGAGTATTATGGATGTTTGGAGAATTCGATCTA 956
|| | | || | ||||| ||||||||||| | ||||| |||||
Sbjct 907 GT-TGTAGCCTCC-GAGTACCATGGATGTTTGAACAATTCTATCTA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5