BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491075
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB... 2483 0.0
> AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr4:16931039-16933356 FORWARD LENGTH=1588
Length=1588
Score = 2483 bits (1344), Expect = 0.0
Identities = 1461/1518 (96%), Gaps = 5/1518 (0%)
Strand=Plus/Plus
Query 43 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAAAAGCTCATGAAGTTTAGT 102
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 67 AAGAAAATGACGGCGGCCGAAGTAGCTTCTGCGCAGACCAAGAAGCTCATGAAGTTTAGT 126
Query 103 CTCTCTCTCTTCCGTCGTGGTTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 162
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTTTCTCTCTTCCGTCGTGGCTTTAACTCCTCTAAATGCAAAACGGCGGCGAAGATGGCT 186
Query 163 GTGGCTCGGATAAAGCTTTTAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 222
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTGGCTCGTATAAAGCTTATAAGGAACAAGAGATTAGTTGTGGTGAAGCAAATGAGGCGT 246
Query 223 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACCGCTCGAATCAGAGTTGAGCAT 282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 247 GACATCGCTGTTCTTCTTCAATCCGGTCAAGATGCCACTGCTCGAATCAGAGTTGAGCAT 306
Query 283 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTGATAAGGGAACAGAACATTCAGGCAGCAAACGAAATCATTGAGCTTTTCTGTGAACTT 366
Query 343 ATTGTTGCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 402
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATTGTTTCTCGTCTCACTATCATCACTAAGCAAAAGCAATGTCCTGTGGATCTTAAGGAA 426
Query 403 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAGATTCCTGAGCTTGGAGAT 462
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 427 GGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATGCTCTGAAATTCCTGAGCTTGGAGAT 486
Query 463 CTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 522
||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 487 CTTAGAGACATCTTTGCGAAGAAATATGGGAAAGATTTTGTATCTGCTGCTACTGATTTG 546
Query 523 CGTCCTAGCTGCGGCGTAAACCGAATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 582
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 547 CGTCCTAGCTGCGGTGTTAACCGGATGTTGATTGATAAGCTTTCGGTTAGAAATCCCGGT 606
Query 583 GGAGAATACAAACTCAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 642
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GGAGAATACAAACTGAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGAT 666
Query 643 ACTACAGAGACGGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 702
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACTACAGAGACAGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAGACGGGCCACGT 726
Query 703 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGAAGCTATCAACGAGCCTTTTGAT 762
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 727 AAGTTTGTTAGCGCTTCAAGCTTACCAGTTAATCGTGCAGCTATCAACGAGCCTATTGAT 786
Query 763 CCTACCAAAGCAGTGCCGAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 822
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 CCTACCAAAGCAGTGCCAAGATCGACTAGTAGCATGAGCATCAACACGCATTATCATGAC 846
Query 823 ACCGAGTCAGCAGTGGAAGCAGCTACTGAATTAGCCAAACAGGCAGTTCCAGCAGCACAA 882
||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 847 ACCGAGTCAGCAGCGGAAGCAGCTACAGAATTAGCCAAACAGGCAGTTGCAGCAGCACAA 906
Query 883 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCA-C--CAAGGAATTCTCTGTATCTTCT 939
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 907 GTAGCCTCCTTATTAGCTACCAGAAGAGACAGCAGCAACAAGGAGTTCTCTGTATCTTCT 966
Query 940 GATCGTTCAACAAATCAGAAGGATTCACAGTACATGGatcatcatcatcatcatcTAGGT 999
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 967 GATCATTCAACACACCAGAAGGATTCACAGTACATGGATCATCATCATCATCATCCAGGT 1026
Query 1000 TCAAGAAGAGAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTAGTGCAGAA 1059
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1027 TCAAGAAGACAATCACGAGACTCCGAAACAAGTTCCTATTACGCAAAACCTGGTGCAGAA 1086
Query 1060 AACAGGGGAATGGGTAGAAGACACAGCTACAACTATCCGGGTATTAATGAATCTGACTAC 1119
||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1087 AACAGAGGAATGGGTAGGAGACACAGCTACAACAATCCGGGTATTAATGAATCTGACTAC 1146
Query 1120 GAGGAAGACTACACCAAGACCAAAGCAGAAGCAAAGGAAACAATGAGGAGGAGACACAGC 1179
|||||||| || ||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1147 GAGGAAGAGTATACCAATACCGAAGCAGAAGCAAAAGAAACAATGAGGAGGAGACACAGC 1206
Query 1180 TACAACTCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TACAACCCTCGATCAGTTCCTCCTCCTGCAACTTCTGAGATCAAGTTTGATGAGTCAGAC 1266
Query 1240 TACTACGAGGAAGAGACAGAGCCAGAAGAACCATCACATGGTCGTGTTTCTTCTCTCCCG 1299
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1267 TACTACGAGGAAGAGACAGAGCCAGATGAACCATCACAGGGTCGTGTTTCTTCTCTCCCG 1326
Query 1300 CCAAACCGAGAACCTCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACGGGACTCAAGCGGT 1359
|||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1327 CCAAACCGAGCACCGCCTCAGGCTCCTCAGTCCGGTGAGTCCAGACAGGACTCGAGCGGT 1386
Query 1360 CACCATGTTCACCCAAAACTGCCTGACTATGACATTTTGGCTGCACGTTTTGAAGCAATC 1419
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1387 CACCAGGTTCACCCAAAACTGCCTGACTATGATATTTTGGCTGCACGTTTTGAAGCAATC 1446
Query 1420 AGAAACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATA--TAG 1477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1447 AGACACAGTAAAGGGCCATTGATCTGAAGCCAATAACTTCCACTACTGCTATATACATAG 1506
Query 1478 AAAGAAATCACGTACGGGATAATGCAATTATCATGTTTAGTTTTGTGTATGAAGAAGAAG 1537
|||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 1507 AAAGAAATCATGTACGGGATAATGCAACTATCATGTTTAGTTTTGTTTATGAAGAGGAAG 1566
Query 1538 TAGAAAGATGCATTTTTT 1555
|||||||||||||||||
Sbjct 1567 AAGAAAGATGCATTTTTT 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5