BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491076
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35720.1 | Symbols: | Arabidopsis protein of unknown functi... 1803 0.0
> AT4G35720.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16927972-16929170 FORWARD LENGTH=1199
Length=1199
Score = 1803 bits (976), Expect = 0.0
Identities = 1132/1201 (94%), Gaps = 35/1201 (3%)
Strand=Plus/Plus
Query 1 ATGTATATGTCCTCATTGTCTCCGAGACTCCACAAAGCATACAAAGCTAGATGTGTTAGC 60
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTATATGGCCTCACTGTCTCCGAGACTCCACAAAGCGTACAAAGCTAGATGTGTTAGC 60
Query 61 TTACCGGTTCGGTCTCATCCGAGTGTTAGGAGGATTCAAGAAGTGGTCTCCAAGGTTAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACCGGTTCGGTCTCATCCGAGTGTTAGGAGGATTCAAGAAGTGGTCTCCAAGGTTAGA 120
Query 121 GCTTTGGGGTCTTCTTCGTTAGACTCGAGGACGATGGTCCGTGACGGTCTCTCTGGTCTC 180
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 121 GCTTTGGGGTCTTCTTCGTTAGACTCGAGGACAATAGTCCGTGACAGTCTCTCTGGTCTC 180
Query 181 ACCGAGCTTTACAGATGTTTAAGTGAAGATCTCTTCAAGTCTTCTTCTGAAACTCAACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGAGCTTTACAGATGTTTAAGTGAAGATCTCTTCAAGTCTTCTTCTGAAACTCAACAA 240
Query 241 GCTCTTCTTAACGGTGACGGCTTGATGGAAGAGCTTCTTGAAGTATCACTGAAATACTTA 300
|| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCTTCTTAATGGTGATGGTTTGATGGAAGAGCTTCTTGAAGTATCACTGAAATACTTA 300
Query 301 GAGGTTTGTGGAGGAGCTAAGGACGCAGCGTCGAGGATCAAGAAGATTGTTGTCGAGCTT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAGGTTTGTGGAGGAGCTAAGGACGCAGCTTCGAGGATCAAGAAGATTGTTGTCGAGCTT 360
Query 361 CAGTCTGCTTTGAGAAGGAGCAAGAAAGGAGGTGAGTTTAGCCTCGAGAGTGACGTTGAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CAGTCTGCTTTGAGAAGGAGCAAGAAAGGAGGTGAGTTTAGCCTCGAGAGTGACGTGGAT 420
Query 421 GCTTATGTGGCGTCTAGGAAAGAGATCAAGCAGGAGATCAAGAAGTATATGGTAATGTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTATGTGGCGTCTAGGAAAGAGATCAAGCAGGAGATCAAGAAGTATATGGTAATGTCG 480
Query 481 AAAGAGACCGATGCGTCTTTGGAGAGTGTTTGGTGTGATGGTGATGATCAAGAGATGAGT 540
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AAAGAGACAGATGCGTCTTTGGAGAGTGTTTGGTGTGATGGCGATGATCAAGAGATGAGT 540
Query 541 GCTCTGGTTAGAGTGATGCAAGAGACGAGTGTAATGACTTGTTTCGTCTTACGCTCGGTC 600
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTTAGTTAGAGTGATGCAAGAGACGAGTGTAATGACTTGTTTCGTCTTACGCTCGGTC 600
Query 601 TTCTCCTTCTTGTCTTCGCCGAAAGGGTTAAAGACTAAGAATCATCACCACCACAAAGGT 660
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTCTCGTTCTTGTCGTCGCCTAAAGGGTTAAAGACTAAGAATCATCATCACCACAAAGGT 660
Query 661 TGGGGGATTGTTATGAAGCTTGTGAAGAAAGGAATGGATCATCATCACCAGGAGAAAAGA 720
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 661 TGGGGGATTGTTATGAAGCTTGTGAAGAAAGGAATAGAACATCATCACCAGGAGAAAAGA 720
Query 721 GATCATGAGACGGGATTTTCTTGTCTCGTGCTTGAAGCTATGGAATCTGAGCTTGGGAAG 780
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATTACGAGACGGGATTTTCTTGTCTCGTGCTTGAAGCTATGGAATCTGAGCTTGGGAAG 780
Query 781 CTTGTTGTGATGACGACGAGGGAAGATCAAGAAGAGGAGAAAAAGATTAGTGAAGAAGTA 840
|| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CTCGTTGTGATGATGACAAGGGAAGATCAAGAAGAAGAGAAAAAGATTAGTGAAGAAGTA 840
Query 841 TCTGAGAAGGTTCAATGTACATTGGTTAGATCCGAAGGTGTAGAGGCAGCCATGGAAGAG 900
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTGAGAGGGTTCAATGTGCATTGGTTAGATCCGAAGGTGTAGAGGCAGCCATGGAAGAG 900
Query 901 CTTGAAGAGGGACTTGAAGGATTGTTCAAGGTAATGATACAAGCTAGAGTCTCTCTTCTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTGAAGAGGGACTTGAAGGATTGTTCAAGGTAATGATACAAGCTAGAGTCTCTCTTCTT 960
Query 961 AACATCCTCTCCACTTAATTCAAAATGGATCAGATTCGAATTTCTTGGTCTGGATT--A- 1017
|||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 961 AACATCCTCTCCACTTAA---AA--TGGATCAGATTCGAATTTCTTGGTCTGGATTGGAA 1015
Query 1018 ----GTC-G-----A-TTG----G--G-TT--T---AAAATCTTGGTTTGGTTT--GTTT 1052
|| | | ||| | | || | |||||||||||||||||| ||||
Sbjct 1016 ATAAGTTAGTTGCTACTTGACCAGTCGATTGGTTTTAAAATCTTGGTTTGGTTTTTGTTT 1075
Query 1053 GTTTGTTCTTGTATGTTGTGAGAGAGAGTTTAAACATGCGTCCATGTTTTAGAGGATGTG 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTTTGTTCTTGTATGTTGTGAGAGAGAGTTTAAACATGCGTCCATGTTTTAGAGGATGTG 1135
Query 1113 TGTTTGTTGTAAGTGTGTACATC-GTTCAGGTGTGAACAACTCTTGTAAAGTTTTATGTA 1171
||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||
Sbjct 1136 TGTTTGTTGTAAGTGTGTA-ACCCGTTCAGGTGTGAAAAACTCTTGTAAAGTTTTATGTA 1194
Query 1172 C 1172
|
Sbjct 1195 C 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5