BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491077
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35710.1 | Symbols: | Arabidopsis protein of unknown functi... 1182 0.0
AT4G35690.1 | Symbols: | Arabidopsis protein of unknown functi... 704 0.0
AT2G17680.1 | Symbols: | Arabidopsis protein of unknown functi... 163 2e-39
> AT4G35710.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16925301-16926152 FORWARD LENGTH=852
Length=852
Score = 1182 bits (640), Expect = 0.0
Identities = 787/856 (92%), Gaps = 17/856 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAATATGATTATTAAGAAACAATTAAGATCTATAAGTTTACCTTCTAGGTCGCAT 60
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1 ATGGCGAATATGATCATTAAGAAACAGTTAAGATCTATAAGTTTACCTTCTAGATCACAA 60
Query 61 CCAAGCACGAGTGGGCTCGAAG-ATGCTCTTAATAAGATTAAAACAA-T--CACCAC-A- 114
|||||||| ||||||||||||| || ||||||||||||||||||||| | |||||| |
Sbjct 61 CCAAGCACAAGTGGGCTCGAAGAAT-CTCTTAATAAGATTAAAACAATTAACACCACGAC 119
Query 115 -GGTTCATCCGAGTCGATCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACAATTGTAT 173
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 120 GGGTTCATCCGAGTCGATCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACATTTTTCT 179
Query 174 GGAGGATTTTCTGAAAATGGGTTCAACGCAACAGGTTATGTCCTCTGGTGGGTCGGAGTT 233
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||
Sbjct 180 GGAGGAGTTTCTGAAAATGGGTTCAAAGCAACGGGTTATGTCCTCTGGTGGGTCGGAATT 239
Query 234 CATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCAAGGGA 293
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATCTGCAGCGTCTCAAGGGA 299
Query 294 TCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGAAAGAA 353
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 300 TCTAATGGTGGAGACTCACGAGCATGTTCGTGGCGTTCAGTCATATGTTAGAAGAAAGAA 359
Query 354 AGTA---GCCGGAGGAGGAGGAGATAAACTCGATGTCGCTGTCT-CGAGCTATGTCGGAT 409
|||| | |||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 360 AGTATCTGGTGGAGGAGGAGGAGATAAAATCGATGTCGCTGTCTCCGA-CTATGTCGGAT 418
Query 410 TTAGGAAGAACATGAGAAAAGAAGCTAAGAAGCTTCTAGGATCCTTAAAGAAAATCAATG 469
||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |||
Sbjct 419 TTAGGAAGAACATGAGAAAAGAAGCCAAGAAGCTTCTAGGATCCTTGAAGAAAGTCGATG 478
Query 470 GAGGGTCTCGTTCATGTGATAATGATCATGAAGATGAACATCTTGTGGCGGTTATAGAT- 528
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 GAGGGACTCGTTCATGTGATAATGATCATGAAGATGAACAACTTGTGGCGGTTATAGATA 538
Query 529 GCGATGAGAGGAGTGATATCCGTAAGTGTCGTCGTATTGAAGTCGTTCTTGGAATTCTTG 588
| | ||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 539 G-GGTGAGACGAGTGGTATCGGTAAGTGTCGTCGTATTGAAGTCGTTCTTGGAATTATTG 597
Query 589 TCCAGACCAAAAAGTAACATAAAGAGCAAGTTGGCTTCGGTGCTAAAGAAGAAGAAGGAT 648
||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 598 TCCAGACGAAAAAGTAACATAAAGAGCAAGTTGGCGTCGGTACTAAAGATGAAGAAGGAT 657
Query 649 AATCATGAGGCAACCAAGAACGAGTTGGAGACATTAGATTCCGCGATTTGCGGAGAAATT 708
|| |||| | || ||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 658 AACCATGCGCCAGCCAAGAACGTGTTGGAGACATTAGATTCCGCGATTTTCGGAGATTTT 717
Query 709 TCCTCTC-TCGATGATCTACAAAAGGAGCTTGAGGAGGTTGAGATGAGCATTAGTGGGTT 767
| |||| | |||||||| ||||| |||||||| |||||||||||| ||||| |||||||
Sbjct 718 TTATCTCAT-GATGATCTTCAAAATGAGCTTGAAGAGGTTGAGATGTGCATTGGTGGGTT 776
Query 768 CGAGAGAAATCTAGAAGGGTTGTTTCGAAGGTTGATAAGAACACGAGCCTCGGTTCTCAA 827
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 CGAGAGAAATCTAGAAGGGTTGTTTCGAAGGTTGATAAGAACACGAGCCTCGATTCTCAA 836
Query 828 CATAATCTCTCATTAG 843
||||||||| ||||||
Sbjct 837 CATAATCTCCCATTAG 852
> AT4G35690.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16921803-16922963 FORWARD LENGTH=1161
Length=1161
Score = 704 bits (381), Expect = 0.0
Identities = 723/879 (82%), Gaps = 60/879 (7%)
Strand=Plus/Plus
Query 1 ATGGCGAATATGATTATTAAGAAACAATTAAGATCTATAAGTTTACCTTCTAGGTCGCAT 60
||| |||||||| | | ||||| ||| ||||||||||||| |||||||| || ||||||
Sbjct 84 ATGTCGAATATGCTCGTCAAGAATCAACTAAGATCTATAAGCTTACCTTCAAGCTCGCAT 143
Query 61 CCAAGCACGAGTGGGCTCGAAG-ATGCTCTTAATAAGATTAAAAC-A--ATCACC---AC 113
|||||||||| || |||| | || ||||||| ||| | ||||| | | |||| ||
Sbjct 144 CCAAGCACGACCGGTATCGAGGAAT-CTCTTAACAAGGTCAAAACGATTAACACCATGAC 202
Query 114 AGGTTCATCCGAGTCGA-TCTTGATGGGCTTGGCTGGTTTGGAGGAGCTCTACAATTGTA 172
||||| ||||| || | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 203 GGGTTCGTCCGAATC-AGTCTTGATGGGCTTGGAGGGTTTGGAGGAGCTCTACAATTGTA 261
Query 173 TGGAGGATTTTCTGAAAATGGGTTCAACGCAACAGGTTATGTC--C-TCTGGTGGGTCGG 229
||| ||||||||||||||||| |||||||||| ||||||||| | |||| ||| || |
Sbjct 262 CGGAAGATTTTCTGAAAATGGGCTCAACGCAACGGGTTATGTCATCATCTGATGGATCCG 321
Query 230 AGTTCATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCAA 289
|||| |||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct 322 AGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGTGTCTCGA 381
Query 290 GGGATCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGAA 349
||||||| |||||||| ||||| |||||||||||||||||||| |||||||| || ||||
Sbjct 382 GGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGTTCAATCATGTGTCAGGAGAA 441
Query 350 AGAAAGTAGCCGGAGGAGGAGGAGATAAACTCGATGTCGCTGTCTCGAGCTATGTCGGAT 409
||||||||| ||||||| || ||| ||||||||||||| ||| || | ||||||||||
Sbjct 442 AGAAAGTAGTCGGAGGA-GA--AGACCAACTCGATGTCGCCGTCGCGGGGTATGTCGGAT 498
Query 410 TTAGGAAGAACATGAGAAAAGAAGCTAAGAAGCTTCTAGGATCCTTAAAGAAAATCAATG 469
|||| ||||||||||||||||||||||||| |||||| ||||| || ||||| || |||
Sbjct 499 TTAGAAAGAACATGAGAAAAGAAGCTAAGAGGCTTCTTGGATCTTTGAAGAACATTGATG 558
Query 470 GAGG-----G-TC-TCGTTCAT--GT-GATAATGATCATG-AAGATGAACATCTTGTGGC 518
|||| | || || |||| || |||||| | | | |||| |||||||||||||
Sbjct 559 GAGGTTTAAGTTCATC-ATCATCAGTAAATAATGGTGA-GCAAGAAGAACATCTTGTGGT 616
Query 519 GGTTATAGATGCGATGAGAGGAGTGA-TATCCGTAAGTGTCGTC-GTATTGAAGTCGTTC 576
|||| |||| || |||||| ||| | | ||||| || |||| | || |||| ||||||
Sbjct 617 GGTTGTAGACGCCATGAGACAAGT-AGTTTCCGTTAGCGTCG-CGGTGTTGAGGTCGTTT 674
Query 577 TTGGAATTCTTGTCC--A-GACCAAAAAGTAACATAAAGAGCAAGTTGGCTTCGGTGCTA 633
||||||||||| ||| | ||| | |||||||||| ||||||||| |||||||||| |||
Sbjct 675 TTGGAATTCTTATCCGGACGACGACAAAGTAACATTAAGAGCAAGCTGGCTTCGGTACTA 734
Query 634 AAGAAGAAGAAGGAT-A--ATCATGAGGCA-ACCAAGAACGAGTTGGAGACATTAGATTC 689
||||| ||||||| | | || ||||| | ||||||||||||||||||| | | ||
Sbjct 735 AAGAAAAAGAAGGTTCACCATGTTGAGG-AGACCAAGAACGAGTTGGAGA-A-T---TT- 787
Query 690 CGCGATTTGCGGAGAAATTTCCT-CTCTCG--ATGATCTACAAAAGGAGCTTGAGGAGGT 746
| ||| | | |||| | || || ||||| |||||||||||||| |||||||||| ||
Sbjct 788 -G-GATCT-C-GAGATA-TT-CTGTTCTCGTAATGATCTACAAAAGAAGCTTGAGGAAGT 841
Query 747 TGAGATGAGCATTAG-TGGGTTCGAG-AGAAATCTAGAAGGGTTGTTTCGAAGGTTGATA 804
||||||||||||| | ||| |||||| ||||| |||||||| | |||||||||||||||
Sbjct 842 TGAGATGAGCATT-GATGGATTCGAGAAGAAA-CTAGAAGGACTATTTCGAAGGTTGATA 899
Query 805 AGAACACGAGCCTCGGTTCTCAACATAATCTCTCATTAG 843
||||||||||||||| ||||||||||||| |||||||||
Sbjct 900 AGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAG 938
> AT2G17680.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7679008-7680378 FORWARD LENGTH=1371
Length=1371
Score = 163 bits (88), Expect = 2e-39
Identities = 114/127 (90%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 229 GAGTTCATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATATGCAGCGTCTCA 288
||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 504 GAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCG 563
Query 289 AGGGATCTAATGGTGGATACTCACGAGCATGTTCGTGGTGTTCAGTCATGTGTTAGAAGA 348
|||||||| ||||| || ||||| |||||||||| |||| ||||||| |||||||| |||
Sbjct 564 AGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGA 623
Query 349 AAGAAAG 355
| |||||
Sbjct 624 AGGAAAG 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5