BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491080
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35660.1 | Symbols: | Arabidopsis protein of unknown functi... 1718 0.0
> AT4G35660.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16912509-16913704 FORWARD LENGTH=1196
Length=1196
Score = 1718 bits (930), Expect = 0.0
Identities = 1091/1166 (94%), Gaps = 22/1166 (2%)
Strand=Plus/Plus
Query 1 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAATAAATTAAGCAAAAG 60
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 11 AAAGCTTGACGTTGCTCCATTTATAACCACAAAGAGATTATTAAAT---TT-AGCAAAAA 66
Query 61 GGGATAATTGTGCAAATATCCTCTTTATAAGttttttttttAACACATGCCCAATTTGCT 120
|||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct 67 GGGATAATTGTGCAGATATCCTCTTTATAAG--GTTTTTTAAACACATGCCCAATTTGCT 124
Query 121 CTTACATTAAAACC--TTT--TTAAAGGGTTATTTTGGATTTCTCTGTTAAGTTTTCTTC 176
|||||||||||||| ||| ||||||||||||||||||||| ||||||||||| || ||
Sbjct 125 CTTACATTAAAACCTTTTTAATTAAAGGGTTATTTTGGATTTATCTGTTAAGTTCTCCTC 184
Query 177 TATTATATACC-TTGGAGTCTCTGAACCTTTATAACCCACCAAAAACCATTTCCAAGTTT 235
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 185 TATTATATACCTTTGAAGTCTCTGAACCTTTATAACCCACCAAAACCCATTTCCAAGTTT 244
Query 236 AAGTC-TTTTGATTTCTCTGTTTGCTTCAGAGCTTGGAAAAATGGCAG-A--ATCATCAT 291
||| | |||||| |||||||||||||||||||||||| ||||||| | | ||||||||
Sbjct 245 AAGGCTTTTTGACTTCTCTGTTTGCTTCAGAGCTTGG--AAATGGCTGAATCATCATCAT 302
Query 292 CCTCTGCGGTGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 351
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCTCTGTAGCGACTACGCATGTACCTGCTAGGTCTATTAGTTTGCCTACAAGACTAATCC 362
Query 352 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ATCCTAAAGCACAGAGAGTTGAAGAAGAACTGAAAAAGATTCAAGCTTTAAACTCTTCTT 422
Query 412 CATCAGCTTCTTCTAGGATCAAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 471
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 423 CATCAGCTTCTTCTCGGATCCAACTTGGACTTGCCAAGCTCGTTGAGCTCTATGACTTTG 482
Query 472 TCAATGAACAAGTCATATGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACG 531
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCAATGAACAAGTCATAAGTTCTCCTCAAGGCCAACAAGCTCTTCGCCTTTGTCGCAACA 542
Query 532 GGAAACTTGTGGAAGACTCTCTTGATGAATCCATCTTGTTACTAGATGTCTCTGACTTCA 591
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 GGAAACTTGTGGAAGACGCTCTTGATGAATCCATCGTGTTACTAGATGTCTCTGACTTCA 602
Query 592 CAAGAGACTTGATAGGAACACTCATGGAGCAAATTCAAGAACTTCAATCTGCTTTACGTA 651
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 603 CAAGAGACTTGATAGGAACACTCATGGAGCATATTCAAGAACTTCAATCCGCTTTACGTA 662
Query 652 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAACTTACATTAGCTTTCAGA 711
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 663 GACGCAGAGGAAATCTCTCTTCCGTTCAGTCCGAGATCCGAAGTTACATTAGCTTTCACA 722
Query 712 AGAAGTTCAAGAACGCAGCAGATAGACAACTTAAATCCCTTGCAAGGACACAAAGAAAGA 771
|||| | ||||| || ||||| |||||| |||||||||||||||||| ||||| |||||
Sbjct 723 AGAAATCCAAGACCGAAGCAGCGAGACAAGTTAAATCCCTTGCAAGGAGACAAACAAAGA 782
Query 772 AAAAAGATCCGGTTATCAAACAATCTCG-TGATCTTGATCAACATTCTTCAATGGTCTCC 830
|||||| | ||||||||||||||| || || ||||||| |||||||||| |||||||||
Sbjct 783 AAAAAGCTTGGGTTATCAAACAATC-CGGTGGTCTTGATGAACATTCTTCTATGGTCTCC 841
Query 831 AACATTCTAAGGCAATCAAACGCGTCGACGATCTCTATTTTGCAGTCACTCTTGCAGTTT 890
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 842 AATATTCTAAGGCAATCAAACGCATCGACGATCTCTATTTTACAGTCACTCTTGCAGTTT 901
Query 891 CTTTCTTCTTCCGGTGAGAAC--C-AGAAGAAGAATGGTGAAATTGGATGTGTAGATAAC 947
|||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 902 CTTTCTACTTCCGGTGAGAACAACGAGAAGAAAAATGGTGAAATTGGATGTGTAGATAAC 961
Query 948 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATCGTGAAGGACATTGAT 1007
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 962 TCGATGATCCGTTCTTTCTTTGGAAGAATCATCGGTAGGAAGATGGTGAAGGAGATTGAT 1021
Query 1008 GCGCAAACAATCCTCGGGAAATTAGCTATGGTTAATGCGAGCCTTGAAGCAATTAAGGAT 1067
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1022 GCGCAAACAATCCTCGGGAGATTAGCTATGGTTAATGTGAGCCTTGAGGCAATTAAGGAT 1081
Query 1068 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GAGTTAAGTTACTTATCTAGACGACTTATTCAACATAGAGCGTCTCTCTTGAACATTGTT 1141
Query 1128 ACTCTATAACAATAAGAGTTTTGTAT 1153
|||||||||||| || | ||||||||
Sbjct 1142 ACTCTATAACAAAAATAATTTTGTAT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5