BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491082
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35650.1 | Symbols: IDH-III | isocitrate dehydrogenase III |... 2100 0.0
> AT4G35650.1 | Symbols: IDH-III | isocitrate dehydrogenase III
| chr4:16908519-16910190 FORWARD LENGTH=1389
Length=1389
Score = 2100 bits (1137), Expect = 0.0
Identities = 1315/1400 (94%), Gaps = 16/1400 (1%)
Strand=Plus/Plus
Query 1 GTAAATCGCCGAAAACGAAATCGTCCCTCGTTGCTCTGAAACCCTAAAAGAAGCAAAATC 60
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1 GTAAATCGCCGAAAACGAAATCGACCTTCGTTGCTCTGAAACCCTAAAAGAAGCTAAATC 60
Query 61 TACCAATGGCGAGAAGATCCGTTTCGATGCTTAGTCGCCTTCTGGCGAATCCTCCTTCTC 120
|| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 TAGCAATGGCGAGAAGATCCGTTTCGATATTTAATCGCCTTCTGGCGAATCCTCCTTCTC 120
Query 121 CATTCACCGCACTGTCCCGATCCATCACCTACATGCCTAGACCAGGAGACGGAGCTCCAC 180
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 121 CATTCACATCACTGTCCCGATCCATCACCTACATGCCTAGACCCGGAGATGGAGCTCCAC 180
Query 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTAGTGACCGGTGCGGTTGAAC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTGGTGACCGGTGCGGTGGAAC 240
Query 241 AGGTCATGGAAGCTATGCACGCCCCGGTGCATTTCGAGCGGTACGAGGTTCTTGGCCACA 300
||||||||||||| |||||||| || |||||||||||| | ||||||||||| || |||
Sbjct 241 AGGTCATGGAAGCGATGCACGCGCCAGTGCATTTCGAGAGATACGAGGTTCTAGGAAACA 300
Query 301 TGAGAAAAGTCCCTGAAGAAGTAATCGAGTCTGTGAAGAGAAACAAGGTCTGTTTAAAAG 360
|||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||
Sbjct 301 TGAGAAAAGTCCCTGAAGAAGTGATCGAGTCTGTGAAGAGAAACAAGGTTTGTCTCAAAG 360
Query 361 GGGGATTAGCGACTCCTGTTGGTGGTGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGATTAGCGACTCCTGTTGGTGGGGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420
Query 421 AACTCGATATCTTCGCTTCTCTAGTGAATTGTATCAATGTCCCTGGATTAGTGACACGAC 480
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||
Sbjct 421 AACTCGATATCTTCGCTTCTCTTGTCAATTGCATCAATGTCCCTGGATTAGTGACGCGAC 480
Query 481 ACGAGAATGTTGATATCGTTGTGATTAGAGAGAACACTGAAGGAGAGTATTCAGGTCTCG 540
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 481 ACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCG 540
Query 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600
Query 601 AGAGAATTGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGAATAGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660
Query 661 CTGTTCATAAAGCTAACATCATGAAGCTCGCGGATGGGCTCTTCCTCGAATCTTGTAGAG 720
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 661 CTGTTCATAAAGCTAACATTATGAAGCTTGCGGATGGGCTCTTCCTTGAATCTTGTAGAG 720
Query 721 AGGTTGCTAAACACTATCCGGGGATTACTTACAATGAAATAATCGTAGACAATTGTTGTA 780
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 AGGTTGCTAAACATTATTCGGGGATTACTTACAATGAAATAATCGTAGACAATTGCTGTA 780
Query 781 TGCAGCTTGTCGCCAAGCCCGAGCAATTTGATGTCATGGTGACGCCTAATTTGTATGGTA 840
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 TGCAGCTTGTCGCCAAGCCTGAGCAATTTGATGTCATGGTGACACCTAATTTGTATGGTA 840
Query 841 ACCTTGTAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGAA 900
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 ACCTTATAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGGA 900
Query 901 ATGTTGGTGCAGAACATGCGATATTTGAGCAAGGCGCATCAGCCGGGAATGTGGGGAATG 960
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 901 ATGTTGGTGCAGAACATGCGATATTCGAGCAAGGTGCATCAGCAGGGAATGTGGGGAATG 960
Query 961 ATAAGATAGTGGAACAGAAGAAAGCTAATCCGGTGGCTCTACTTCTCTCATCAGCAATGA 1020
||||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 961 ATAAGATGGTGGAACAGAAGAAAGCGAATCCGGTGGCTCTACTTCTCTCGTCGGCTATGA 1020
Query 1021 TGCTTAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGCTAAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080
Query 1081 TGATTCAAGAAGGAAAATACAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGATTAAAGAAGGAAAATATAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140
Query 1141 TTGTTGATGCGGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTGTTGATGCTGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200
Query 1201 GCTCCTTCTTTCGTCTTTTTCATTTAAACTAAGAAAAAAGTGTTGgttttctctgtttta 1260
||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1201 GCTTCTTCTTTCGTCTTTTTCATTTCAACTAAGAGAAAAGTGTTGGTTTTCTCTGTTTTG 1260
Query 1261 cgttgctctttttttatttcttgattcattttactagttcat-tttttgtcttttgATGA 1319
||||||| |||||| |||||||||||||||| | |||| | |||||| || | |
Sbjct 1261 CGTTGCTATTTTTTG-TTTCTTGATTCATTTT--T-GTTC-TCTTTTTGA-TT---A--A 1309
Query 1320 TATTCGATCTCACGTCTGAGCTTGAGCTCTATGTTATACAATAAAATCAATAAAGA--GA 1377
||| ||||||||||| ||||| |||||||||||||||| |||||||||||||| || ||
Sbjct 1310 TATCCGATCTCACGTTTGAGCATGAGCTCTATGTTATAAAATAAAATCAATAAGGACAGA 1369
Query 1378 --GAAGCAATGTTGTTTATC 1395
||||||||||||||||||
Sbjct 1370 CAGAAGCAATGTTGTTTATC 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5