BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491082 Length=1395 Score E Sequences producing significant alignments: (Bits) Value AT4G35650.1 | Symbols: IDH-III | isocitrate dehydrogenase III |... 2100 0.0 > AT4G35650.1 | Symbols: IDH-III | isocitrate dehydrogenase III | chr4:16908519-16910190 FORWARD LENGTH=1389 Length=1389 Score = 2100 bits (1137), Expect = 0.0 Identities = 1315/1400 (94%), Gaps = 16/1400 (1%) Strand=Plus/Plus Query 1 GTAAATCGCCGAAAACGAAATCGTCCCTCGTTGCTCTGAAACCCTAAAAGAAGCAAAATC 60 ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| Sbjct 1 GTAAATCGCCGAAAACGAAATCGACCTTCGTTGCTCTGAAACCCTAAAAGAAGCTAAATC 60 Query 61 TACCAATGGCGAGAAGATCCGTTTCGATGCTTAGTCGCCTTCTGGCGAATCCTCCTTCTC 120 || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 61 TAGCAATGGCGAGAAGATCCGTTTCGATATTTAATCGCCTTCTGGCGAATCCTCCTTCTC 120 Query 121 CATTCACCGCACTGTCCCGATCCATCACCTACATGCCTAGACCAGGAGACGGAGCTCCAC 180 ||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 121 CATTCACATCACTGTCCCGATCCATCACCTACATGCCTAGACCCGGAGATGGAGCTCCAC 180 Query 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTAGTGACCGGTGCGGTTGAAC 240 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 181 GAACCGTAACCCTAATTCCCGGCGACGGAATCGGACCTTTGGTGACCGGTGCGGTGGAAC 240 Query 241 AGGTCATGGAAGCTATGCACGCCCCGGTGCATTTCGAGCGGTACGAGGTTCTTGGCCACA 300 ||||||||||||| |||||||| || |||||||||||| | ||||||||||| || ||| Sbjct 241 AGGTCATGGAAGCGATGCACGCGCCAGTGCATTTCGAGAGATACGAGGTTCTAGGAAACA 300 Query 301 TGAGAAAAGTCCCTGAAGAAGTAATCGAGTCTGTGAAGAGAAACAAGGTCTGTTTAAAAG 360 |||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||| Sbjct 301 TGAGAAAAGTCCCTGAAGAAGTGATCGAGTCTGTGAAGAGAAACAAGGTTTGTCTCAAAG 360 Query 361 GGGGATTAGCGACTCCTGTTGGTGGTGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 361 GTGGATTAGCGACTCCTGTTGGTGGGGGTGTCAGTTCTTTGAATATGCAATTGAGGAAAG 420 Query 421 AACTCGATATCTTCGCTTCTCTAGTGAATTGTATCAATGTCCCTGGATTAGTGACACGAC 480 |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||| Sbjct 421 AACTCGATATCTTCGCTTCTCTTGTCAATTGCATCAATGTCCCTGGATTAGTGACGCGAC 480 Query 481 ACGAGAATGTTGATATCGTTGTGATTAGAGAGAACACTGAAGGAGAGTATTCAGGTCTCG 540 |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 481 ACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCG 540 Query 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGGTGATAACAAAGTTTTGTTCTG 600 Query 601 AGAGAATTGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGAGAATAGCGAGATATGCATTTGAGTATGCGTATCTAAACAATAGGAAGAAAGTGACTG 660 Query 661 CTGTTCATAAAGCTAACATCATGAAGCTCGCGGATGGGCTCTTCCTCGAATCTTGTAGAG 720 ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| Sbjct 661 CTGTTCATAAAGCTAACATTATGAAGCTTGCGGATGGGCTCTTCCTTGAATCTTGTAGAG 720 Query 721 AGGTTGCTAAACACTATCCGGGGATTACTTACAATGAAATAATCGTAGACAATTGTTGTA 780 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 721 AGGTTGCTAAACATTATTCGGGGATTACTTACAATGAAATAATCGTAGACAATTGCTGTA 780 Query 781 TGCAGCTTGTCGCCAAGCCCGAGCAATTTGATGTCATGGTGACGCCTAATTTGTATGGTA 840 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 781 TGCAGCTTGTCGCCAAGCCTGAGCAATTTGATGTCATGGTGACACCTAATTTGTATGGTA 840 Query 841 ACCTTGTAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGAA 900 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 841 ACCTTATAGCAAACACGGCGGCTGGAATAGCCGGTGGCACTGGAGTGATGCCAGGAGGGA 900 Query 901 ATGTTGGTGCAGAACATGCGATATTTGAGCAAGGCGCATCAGCCGGGAATGTGGGGAATG 960 ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 901 ATGTTGGTGCAGAACATGCGATATTCGAGCAAGGTGCATCAGCAGGGAATGTGGGGAATG 960 Query 961 ATAAGATAGTGGAACAGAAGAAAGCTAATCCGGTGGCTCTACTTCTCTCATCAGCAATGA 1020 ||||||| ||||||||||||||||| ||||||||||||||||||||||| || || |||| Sbjct 961 ATAAGATGGTGGAACAGAAGAAAGCGAATCCGGTGGCTCTACTTCTCTCGTCGGCTATGA 1020 Query 1021 TGCTTAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TGCTAAGACATCTCCGGTTTCCTACTTTTGCTGATCGGCTTGAAACAGCAGTGAAACAAG 1080 Query 1081 TGATTCAAGAAGGAAAATACAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1081 TGATTAAAGAAGGAAAATATAGAACAAAAGATCTTGGAGGAGATTGTACCACGCAGGAAG 1140 Query 1141 TTGTTGATGCGGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 TTGTTGATGCTGTCATAGCAGCTCTTGAGTGAAACCATGTGAGCTTCTCTGCTTCTGCTT 1200 Query 1201 GCTCCTTCTTTCGTCTTTTTCATTTAAACTAAGAAAAAAGTGTTGgttttctctgtttta 1260 ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1201 GCTTCTTCTTTCGTCTTTTTCATTTCAACTAAGAGAAAAGTGTTGGTTTTCTCTGTTTTG 1260 Query 1261 cgttgctctttttttatttcttgattcattttactagttcat-tttttgtcttttgATGA 1319 ||||||| |||||| |||||||||||||||| | |||| | |||||| || | | Sbjct 1261 CGTTGCTATTTTTTG-TTTCTTGATTCATTTT--T-GTTC-TCTTTTTGA-TT---A--A 1309 Query 1320 TATTCGATCTCACGTCTGAGCTTGAGCTCTATGTTATACAATAAAATCAATAAAGA--GA 1377 ||| ||||||||||| ||||| |||||||||||||||| |||||||||||||| || || Sbjct 1310 TATCCGATCTCACGTTTGAGCATGAGCTCTATGTTATAAAATAAAATCAATAAGGACAGA 1369 Query 1378 --GAAGCAATGTTGTTTATC 1395 |||||||||||||||||| Sbjct 1370 CAGAAGCAATGTTGTTTATC 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68724546105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5