BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491084
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35630.1 | Symbols: PSAT | phosphoserine aminotransferase | ... 2556 0.0
AT2G17630.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1254 0.0
AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltran... 193 6e-48
> AT4G35630.1 | Symbols: PSAT | phosphoserine aminotransferase
| chr4:16904059-16905722 FORWARD LENGTH=1664
Length=1664
Score = 2556 bits (1384), Expect = 0.0
Identities = 1587/1679 (95%), Gaps = 37/1679 (2%)
Strand=Plus/Plus
Query 1 GACAAAACTAGTACCACCTAACACGACGAAACGCCGTCGTTTTCAATCTAtttttttATA 60
||||||||||||||||||| | || || |||||| ||||||||||| ||| ||| ||||
Sbjct 1 GACAAAACTAGTACCACCT-A-AC-AC-AAACGCTGTCGTTTTCAAGCTACATTTATATA 56
Query 61 TCTCCCACCAACTCTTTTTCAGATC-TTTGTCTAAGTAAAAGCGAAAAGGGCAACGCACA 119
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 57 TCTCCCACCAACTCTTTCTCAGATCTTTTGTCTAAGTAAAAGCGAAAAGGGCAACAAACA 116
Query 120 AAAATAAACTGC-GACAATCTCACAACAATCATGGCGGCTTCGACGAACTCTTTCCTTGT 178
|||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 117 AAAATAAACT-CGGAGAATCTCACAACAATCATGGCGGCTACGACGAACTCTTTCCTTGT 175
Query 179 CGG-A--AACAACACTCAGATCCCTGCTTTCAAACCCAAATCAACATCTCAATCCCTTCT 235
||| | |||||||||||||| |||||||| |||||||||||| ||||||||||| ||||
Sbjct 176 CGGAAGCAACAACACTCAGATTCCTGCTTTGAAACCCAAATCATCATCTCAATCCTTTCT 235
Query 236 TCACCTCAGCAAACCAAACACCGTGAACTTCGCCGGCAAAACCAAGCCCGTCGCTGTTAG 295
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 236 TCACCTCAGCAAACCAAACACCGTCAACTTCGTCAGCAAAACCAAGCCCGTCGCTGTTAG 295
Query 296 ATGCGTCGCGTCAACGACTCAAGTTGAAGATGGAGTTAAATCCGGCTCCGTCGGATCCCA 355
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 296 ATGCGTCGCTTCAACGACTCAAGTTCAAGATGGAGTTAGATCCGGCTCCGTCGGATCCCA 355
Query 356 AGAACGGGTTTTTAACTTCGCGGCGGGTCCAGCCACTTTACCTGAGAACGTTCTCCTAAA 415
|||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 356 AGAACGTGTCTTCAACTTCGCGGCGGGTCCAGCCACTTTGCCTGAGAACGTTCTCCTAAA 415
Query 416 AGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCA 475
Query 476 CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGC-TCT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGCTTC- 534
Query 535 TAGAGATTCCTCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCGACTACTCAATTCG 594
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 TCGAGATTCCTCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCCACTACTCAATTCG 594
Query 595 CTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTT 654
Query 655 CGTGGGGAGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACGAATGTGATTTGGT 714
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 CGTGGGGTGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACTAATGTGATTTGGT 714
Query 715 CTGGGAAATCTGAGAAATACACAAAGGTTCCATCTTTTGAGGAGTTGGAGCAAACTCTTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 CTGGGAAATCTGAGAAATACACAAAGGTTCCATCTTTTGAGGAGTTGGAGCAAACTCCGG 774
Query 775 ACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATT 834
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACGCTAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATT 834
Query 835 ACCCTGTTCCTAAAAACCCTGATGGGTTCTTGGTTGCTGATATGTCTTCTAACTTCTGTT 894
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACCCTGTTCCT-AAAA-----ATGGGTTCTTGGTTGCTGATATGTCTTCTAACTTCTGTT 888
Query 895 CGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTTG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTTG 948
Query 955 GTCCATCTGGTGTCACAATTGTGATCATTCGTAAAGATTTGATTGGAAACGCTCGAGATA 1014
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 949 GTCCATCTGGTGTCACAATTGTGATCATTCGTAAAGATTTGATTGGGAATGCTCAAGATA 1008
Query 1015 TCACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAACAGTTCGCTGTACAACACGC 1074
| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1009 TTACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAATAGTTCGTTGTACAACACGC 1068
Query 1075 CTCCTTGCTTTGGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAAGGTG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTCCTTGCTTTGGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAAGGTG 1128
Query 1135 GATTGAAAGAAGTGGAGAAGAAGAATCAGAGGAAAGCTGATTTGCTTTACAATGCCATTG 1194
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1129 GATTGAAAGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGATTTGCTTTACAATGCTATTG 1188
Query 1195 AAGAAAGCAAAGGCTTTTTCAGGTGTCCTGTTGAGAAATCAGTGAGGTCGTTGATGAATG 1254
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAGAAAGCAATGGCTTTTTCAGATGTCCTGTTGAGAAATCAGTGAGGTCGTTGATGAATG 1248
Query 1255 TGCCTTTTACATTGGAGAAATCTGAATTGGAAGCTGAGTTTATCAAGGAAGCTGCTAAAG 1314
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TGCCTTTCACATTGGAGAAGTCTGAATTGGAAGCTGAGTTTATCAAGGAAGCTGCTAAAG 1308
Query 1315 AGAAGATGGTGCAGCTCAAAGGGCATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACA 1374
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1309 AGAAGATGGTGCAGCTCAAAGGACATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACA 1368
Query 1375 ATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTCCAGGCTA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 ATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTCCAGGCTA 1428
Query 1435 AGCATGCTTAGTTTTAAGGGTTTTTGCATTTTGGTTATGTTTGTTG---G--G-T--G-- 1484
|||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1429 AGCATGCTTAGTTTTAAGGGTTTTTGCATTTTGGTTATGTTTGTTGAAAGATGATAAGCT 1488
Query 1485 --A----TGATAAGCTTTAAAGCTTATGATTTGGTTTTCTTTCTTCTTTCCAGAATCAAT 1538
| |||||||||||||||||||||||||| |||| |||||||||| |||||| |||
Sbjct 1489 TTAAAGATGATAAGCTTTAAAGCTTATGATTTGTTTTTTTTTCTTCTTTTCAGAATGAAT 1548
Query 1539 AATGTTTAGCAATGTATCAAAATCTTTCTCCAATCAATTGGAAAAACAAGTTTGTTAACA 1598
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1549 AATGTTTAACAATGTATCAAAATCTTTCTCCA-TCAATTGGAAAAACAAGTTTGTTAACA 1607
Query 1599 AAACAAAGAGCTTTGttttttttttttAAGTGATGATGATTAATGATGAAAATCGCCTT 1657
|| |||||||||||||| ||| ||| ||||||| |||||| |||||||||| ||||||
Sbjct 1608 AA-CAAAGAGCTTTGTTATTTGTTTG-AAGTGATTATGATTGATGATGAAAACCGCCTT 1664
> AT2G17630.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr2:7666585-7668065 FORWARD
LENGTH=1481
Length=1481
Score = 1254 bits (679), Expect = 0.0
Identities = 1036/1204 (86%), Gaps = 42/1204 (3%)
Strand=Plus/Plus
Query 343 CCGTCGGATCCCAAG-AACGGGTTTTTAACTTCGCGGCGGGTCCAGCCACTTTACCTGAG 401
||||||||| || || | || || | || ||||| || ||||||||| | ||||| ||
Sbjct 219 CCGTCGGAT-CCGAGCAGCGAGTCATCAATTTCGCCGCAGGTCCAGCCGCATTACCGGAA 277
Query 402 AACGTTCTCCTAAAAGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTG 461
||||| ||||| |||||||| | ||||| || ||||||||||||||||| ||||||||
Sbjct 278 AACGTCCTCCTCAAAGCTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAGTGTT 337
Query 462 ATGGAGATGAGTCA-CAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGA 520
|||||||||||||| | | || |||||||||||||| || || |||||||||||||| ||
Sbjct 338 ATGGAGATGAGTCATC-GCGGTAAAGAGTTTCTCTCAATCATTCAAAAAGCTGAATCTGA 396
Query 521 TCTTCGTCAGC-TCTTAGAGATTCC-TCAGGAATATTCCGTTTTGTTCTTACAAGGTGGT 578
||| ||||||| || | |||||||| || |||||||||||||||||||||||||||||||
Sbjct 397 TCTCCGTCAGCTTC-TCGAGATTCCATC-GGAATATTCCGTTTTGTTCTTACAAGGTGGT 454
Query 579 GCGACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGAT 638
|| ||||||||||||||||||||||||||||||||||| ||||| |||||| | || |||
Sbjct 455 GCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGTAAATCTGATGATTCCGTTGAT 514
Query 639 TTCGTTGTTACTGGTTCGTGGGGAGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAG 698
| | |||||||||| || ||||||||||||||| | |||||||| ||||| ||||| ||
Sbjct 515 TACATTGTTACTGGATCTTGGGGAGATAAAGCTTTTAAGGAAGCTAAGAAATATTGTAAC 574
Query 699 ACGAATGTGATTTGGTCTGGGAAATCTGAGAAATACAC-AAAGGTTCCATCTTTTGA-GG 756
| || |||||||||||||| |||||||||||||| || ||| |||||| | ||||| ||
Sbjct 575 CCTAAAGTGATTTGGTCTGGTAAATCTGAGAAATATACTAAA-GTTCCAACCTTTGATGG 633
Query 757 AGTTGGAGCA-AACTCTTGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCAT 815
| |||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 A-TTGGAGCAGAGTTC-GGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCAT 691
Query 816 GGAGTTGAGTTTAAAGATTACCCTGTTCCTAAAAACCCTGATGG-GTTCTTGGTTGCTGA 874
|| ||||| ||||||||||| ||| || | ||||||||||||| |||||| |||||||
Sbjct 692 GGTGTTGAATTTAAAGATTATCCTCTTGTTGAAAACCCTGATGGTGTTCTTA-TTGCTGA 750
Query 875 TATGTCTTCTAACTTCTGTTCGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGG 934
||||||||| || |||||||| || || || |||||||| ||||| |||||||||||||
Sbjct 751 TATGTCTTCGAATTTCTGTTCTAAGCCGGTGGATGTATCGAAGTTCGGTGTGATTTACGC 810
Query 935 TGGTGCACAGAAGAACGTTGGTCCATCTGGTGTCACAATTGTGATCATTCGTAAAG-ATT 993
|||||| |||||||| |||||||| ||||||||||| |||||||||||||| |||| |||
Sbjct 811 TGGTGCTCAGAAGAATGTTGGTCCTTCTGGTGTCACCATTGTGATCATTCG-AAAGGATT 869
Query 994 TGATTGGAAACGCTCGAGATATCACTCCTGTGATGCTTGATTACAAGATTCATGATGAGA 1053
||||||| || ||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 870 TGATTGGGAATGCTAGAGATATAACTCCGGTGATGCTTGATTACAAGATTCATGATGAGA 929
Query 1054 ACAGTTCGCTGTACAACACGCCTCCTTGCTTT-GGGATTTACATGTGTGGTCTTGTGTTT 1112
|||| ||| |||| |||||||| || || ||| |||||||| ||||||||||||||||||
Sbjct 930 ACAGCTCGTTGTATAACACGCCACCGTG-TTTCGGGATTTATATGTGTGGTCTTGTGTTT 988
Query 1113 GAAGATCTGTTGGAGCAAGGTGGATTGAAAGAAGTGGAGAAGAAGAATCAGAGGAAAGCT 1172
|| ||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 989 GATGATTTGTTGGAGCAAGGTGGTTTGAAGGAAGTGGAGAAGAAGAACCAGAGGAAAGCT 1048
Query 1173 GATTTGCTT-TACAATGCCATTGAAGAAAGCAAAGGCTTTTTCAGGTGTCCTGTTGAGAA 1231
|| ||| || |||||||| ||||| || || | ||| |||||||||||||||||||||||
Sbjct 1049 GAGTTG-TTGTACAATGCGATTGATGAGAGTAGAGGGTTTTTCAGGTGTCCTGTTGAGAA 1107
Query 1232 ATCAGTGAGGTCGTTGATGAATGTGCCTTTTACATTGGAGAAATCTGAATTGGAAGCTGA 1291
|| |||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||
Sbjct 1108 GTCTGTGAGGTCTTTGATGAATGTTCCTTTTACGTTGGAGAAATCGGAGTTGGAAGCTGA 1167
Query 1292 GTTTATCAAGGAAGCTGCTAAAGAGAAGATGGTGCAGCTCAAAGGG-CATAGATCAGTGG 1350
|||||| || ||||||||||| ||||||||||||||||| || ||| |||||||||||||
Sbjct 1168 GTTTATTAAAGAAGCTGCTAAGGAGAAGATGGTGCAGCTTAA-GGGACATAGATCAGTGG 1226
Query 1351 GAGGTATGAGAGCTTCTATTTACAATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTG 1410
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1227 GAGGTATGAGAGCTTCTATTTACAATGCGATGCCATTGGCTGGTGTCGAAAAGCTTGTTG 1286
Query 1411 CTTTCATGAAAGATTTCCAGGCTAAG-CATGCTTAGTTT-TAAGGGTTTTTGCATTT-TG 1467
|||||||||||||||| ||||| ||| ||||||| | || | |||||| ||| |
Sbjct 1287 CTTTCATGAAAGATTTTCAGGC-AAGGCATGCTT-GATTCT-----TTTTTGT-TTTCTA 1338
Query 1468 GTTATGTTTGTTGGGTGATGAT--AAGCTTTAAAGCTTATGATTT-G-GTTTTCTTTC-T 1522
|| || || |||| | || || ||||||| | ||||||||||| | |||||| ||| |
Sbjct 1339 GTCATCTT-GTTGTTT-ATTATGTAAGCTTTGATGCTTATGATTTTGAGTTTTCGTTCCT 1396
Query 1523 TCTT 1526
||||
Sbjct 1397 TCTT 1400
> AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltransferase
3;2 | chr4:16905579-16908357 REVERSE LENGTH=1624
Length=1624
Score = 193 bits (104), Expect = 6e-48
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 1513 TTTTCTTTCTTCTTTCCAGAATCAATAATGTTTAGCAATGTATCAAAATCTTTCTCCAAT 1572
|||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1622 TTTTTTTTCTTCTTTTCAGAATGAATAATGTTTAACAATGTATCAAAATCTTTCTCCA-T 1564
Query 1573 CAATTGGAAAAACAAGTTTGTTAACAAAACAAAGAGCTTTGttttttttttttAAGTGAT 1632
|||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||
Sbjct 1563 CAATTGGAAAAACAAGTTTGTTAACAAA-CAAAGAGCTTTGTTATTTGTTTG-AAGTGAT 1506
Query 1633 GATGATTAATGATGAAAATCGCCTT 1657
|||||| |||||||||| ||||||
Sbjct 1505 TATGATTGATGATGAAAACCGCCTT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5