BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491085
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 | chr4:16901621-16... 2357 0.0
AT2G17620.1 | Symbols: CYCB2;1 | Cyclin B2;1 | chr2:7664103-766... 837 0.0
> AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 | chr4:16901621-16903920
FORWARD LENGTH=1567
Length=1567
Score = 2357 bits (1276), Expect = 0.0
Identities = 1438/1514 (95%), Gaps = 20/1514 (1%)
Strand=Plus/Plus
Query 49 CTTCTTCTTCTTCTAGATTCTTCTCGAGGAACACTATCACCAAATCGAGTAAAAT-AACA 107
||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||
Sbjct 67 CTTCTTCTTCTTCTAGATTCTTCTCCAGGAGCACTAT---CAAATCGAGTAAAATAAACA 123
Query 108 ATGGTTAATCCAGAGGAGAGA-AATCGTAATCTCGTTGTCAAACCCATTACAGAGATTCT 166
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 124 ATGGTTAATCCAGAGGAGA-ACAATCGTAATCTCGTTGTCAAACCCATTACAGAGATTCT 182
Query 167 TCAAGATGATGATACGAGAAGCAGAAAATTCGGAT-TAGAGGTGAAGAGACAGAACAGAA 225
|||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||| |
Sbjct 183 TCAAGATGATGATAAGAGAAGCAGAAAATTCGG-TGTAGAGATGAAGAGACAGAACAGGA 241
Query 226 GAGCATTGGGTGTGATTAATCAGAATCTCGTTGGTTCTAAAGCTTATCCTTGCGTTGTTA 285
|||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||
Sbjct 242 GAGCATTGGGTGTGATTAATCACAATCTCGTTGGTGCAAAAGCTTATCCTTGTGTTGTTA 301
Query 286 ACAAGAGAAGAGGCTTATCTGAGAGAAAACAAGAAAGCTGTGAGAAGAAGAAGCTTGATT 345
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 302 ACAAGAGAAGAGGCTTATCTCAGAGAAAACAAGAAAGCTGTGACAAGAAGAAGCTTGATT 361
Query 346 CATTACATCCGTCAATTGCAAGATCTCAGGAAGAGACTAAGAAGCTGAAACCAAGTGGGA 405
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 CATTGCATCCGTCAATTTCAAGATCTCAGGAAGAGACTAAGAAGCTGAAACCAAGTGGAA 421
Query 406 ACGAGTTTGGTGATTGTATATTCATTGATgaagaagaagagaagaatgaagaagCTACAT 465
|||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 422 ACGAGTTTGGTGATTGCATATTCATTGATGAAGAAGAGGAGAAGAATGAAGAAGTTACAT 481
Query 466 TGGACCAACCTATGCCAATGTCATTGGAGAAACCATACAATGAATCCGATCCAATGGAGG 525
||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 482 TGGACCAACCTATGCCAATGTCATTGGAGGAACCATACATTGAATTTGATCCAATGGAGG 541
Query 526 AAGAAGTTGAGATGGAGGATATagaagaagaagaagaagaagaaCCAATTTTGGATATCG 585
|||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||| |
Sbjct 542 AAGAAGTTGAGATGGAGGATAT-G--GAAGAAGAACAAGAAGAACCAGTTTTGGATATAG 598
Query 586 ACGAATACGATGCAAACAACTCTCTTGCAGTTGTTGAATATGT-CAGTGATCTTTACGAA 644
|||||||||||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct 599 ACGAATACGATGCAAACAACTCTCTTGCAGCTGTTGAATACGTCCA-AGATCTTTACGAT 657
Query 645 TTCTACCGTAAAACCGAGAGATTTAGCTGTGTTCCTCTAGATTATATGGCGCAACAGTTT 704
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TTCTACCGTAAAACCGAGAGATTTAGCTGTGTTCCTCTAGATTACATGGCGCAACAGTTT 717
Query 705 GATATAACTGATAAAATGAGAGCAATACTTATCGATTGGCTCATAGAGGTACATGACAAA 764
|||||| |||| |||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 718 GATATATCTGACAAAATGAGAGCAATACTTATTGACTGGCTCATCGAGGTACATGATAAG 777
Query 765 TTTGAGCTAATGAACGAGACATTGTTTCTAACAGTGAATCTGATAGATAGATTCCTGTCC 824
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 778 TTTGAGCTGATGAACGAGACATTGTTTCTAACAGTCAATCTGATAGATAGATTCTTGTCC 837
Query 825 AAGCAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGCAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCT 897
Query 885 TGCAAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGCAAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAA 957
Query 945 GCTTATATGAGGAACGAAGTTTTAGAAATGGAGAAGATTATGCTTAGTACTTTGCAATTC 1004
||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GCTTATACGAGGACCGATGTTTTAGAAATGGAGAAGATTATGCTTAGTACTTTGCAATTC 1017
Query 1005 AATATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AATATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCA 1077
Query 1065 GACAAGAAGCTTGAGATCTTGGCGTCGTTCTTGATCGAGCTTGCTCTTGTGGACTACGAA 1124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 GACAAGAAGCTTGAGATCTTGGCGTCGTTCTTGATTGAGCTTGCTCTTGTGGACTACGAA 1137
Query 1125 ATGGTTCGGTATCCACCATCGTTGCTAGCCGCCACTGCAGTGTACACAGCTCAATGTACA 1184
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1138 ATGGTTCGGTATCCACCATCGTTACTCGCCGCCACTGCCGTGTACACAGCTCAATGTACA 1197
Query 1185 ATCCATGGCTTCAGTGAATGGAACAGCACTTGTGAATTCCACAGTCACTACTCTGAAAAT 1244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1198 ATCCATGGCTTCAGTGAATGGAACAGCACTTGTGAATTCCATTGTCACTACTCTGAGAAT 1257
Query 1245 CAACTCATAGAATGTTGTAGAAGAATGGTGAGACTACATCAGAAGGCTGGGACTGATAAA 1304
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 CAACTCCTAGAATGTTGTAGAAGAATGGTGAGACTACATCAGAAAGCTGGGACTGATAAA 1317
Query 1305 CTAACAGGAATACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTAT 1364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTAACAGGAGTACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTAT 1377
Query 1365 GAAGCTGCACACTTTCTTGTGTCAGATTCTCACTAAAGAGTGGAAAATAGTAGTTTGTGT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAAGCTGCACACTTTCTTGTGTCAGATTCTCACTAAAGAGTGGAAAATAGTAGTTTGTGT 1437
Query 1425 ATAGCTAGCTGCTAACATTTTCCCTCTCAATTTTTAATTACAAAAGAAATAAGTTCAAAA 1484
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1438 ATAGCTCGCTGCTAACATTTTCCCTCTCAATTTTTAATTACAAACGAAATAAGTTCAAAA 1497
Query 1485 -ATATCCTCTGAATTTGATCTGTAACTTTCAAGTCTTCCTTTTATTGATATCTCAGCAAT 1543
|| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1498 CAT-TCCTCTGA-TTTGATCTGTAAC----AAGTCTTTCTTTTATTGATATCTCAGCAAT 1551
Query 1544 AAAATTCTCTAATA 1557
|||||||||| |||
Sbjct 1552 AAAATTCTCTTATA 1565
> AT2G17620.1 | Symbols: CYCB2;1 | Cyclin B2;1 | chr2:7664103-7666522
FORWARD LENGTH=1612
Length=1612
Score = 837 bits (453), Expect = 0.0
Identities = 1033/1298 (80%), Gaps = 99/1298 (8%)
Strand=Plus/Plus
Query 147 AAACCCA-TTAC-A-GA-GATTCTTCAAGATGATGATACGAGAAGCAGAAAATTCGGATT 202
||||||| || | | || ||||||||||||||| | || ||||| ||||||||||||
Sbjct 95 AAACCCACTT-CAACGACGATTCTTCAAGATGA--A-ACAAGAAGTAGAAAATTCGGACA 150
Query 203 AGAGGTGAAGAGACAGAACAGAAGAGCATTGGGTGTGATTAATCAGAATCTCGTTGGTTC 262
|||| ||||||| |||| ||||||| ||| |||||||||| |||||||||| |||| |
Sbjct 151 AGAGATGAAGAGGGAGAAGAGAAGAGTGTTGCGTGTGATTAACCAGAATCTCGCTGGTGC 210
Query 263 TAA-AGCTTATCCTTGCGTTGTTAACAAGAGAAGAGGCTTA---TC---TGAG--AGAA- 312
|| || ||||||||| ||||| ||||||||| || ||||| || | || ||||
Sbjct 211 -AAGAGTTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTCTAATAAGCAAGAAG 269
Query 313 AACAAGAAAGCTGTGAGAAGAAGAAGCTTGATTCATTACATCCGTCAATTGCAAGATC-- 370
|| ||||| | ||| | ||||||||| ||||||| || | ||| ||| || |||||||
Sbjct 270 AAGAAGAAGGATGTCAAAAGAAGAAGTTTGATTCTTTGCGTCCTTCAGTTACAAGATCTG 329
Query 371 ----TCAGGAAGAGACT---AAGAAGCTGAA------A---CCAAGTGGGAACGAGTTTG 414
| ||||||||||| ||||||||||| | ||||||| ||||| || |
Sbjct 330 GAGTTGAGGAAGAGACTAACAAGAAGCTGAAGCCCTCAGTTCCAAGTGCTAACGACTTCG 389
Query 415 GTGATTGTATATTCATTGATgaagaagaagagaagaatgaagaagCTACATTGGACCAAC 474
||||||||||||| |||||| ||| | | | |||||||||||||||| |
Sbjct 390 GTGATTGTATATTTATTGAT---------GAG--G-A-G--GAAGCTACATTGGACCTTC 434
Query 475 CTATGCCAATGTC-ATTGGAGAAACCATACAATGAATCCGATCCAATGGAGGAAGAAGTT 533
| ||||||||||| || ||||||||||||| |||| | |||||||| ||||||||||
Sbjct 435 CAATGCCAATGTCGCTT-GAGAAACCATACATTGAAGCTGATCCAAT---GGAAGAAGTT 490
Query 534 GAGATGGAGGATATagaagaagaagaagaagaagaaCCAATTTTGGATATCGACG-AATA 592
|||||||||| || | || || | |||||||| || |||||||||| | ||
Sbjct 491 GAGATGGAGG--AT-G--TAA-CAG-TG--GAAGAACCGATCGTGGATATCGATGTCTTA 541
Query 593 CGA-TGCAAACAACTCTCTTGCAGTTGTTGAATATG-TCAGTGATCTTTACGAATTCTAC 650
|| | | || ||||| ||||| | ||||||||||| ||| |||||||||| ||| |||
Sbjct 542 -GACT-CGAAGAACTCGCTTGCGGCTGTTGAATATGTTCA-AGATCTTTACGCATTTTAC 598
Query 651 CGTAA-AACCGAGAGATTTAGCTGTGTTCCTCTAGATTATATGGCGCAACAGTTTGA--T 707
| || || ||||||||||| |||||||| |||| |||||| |||||| | || |
Sbjct 599 AG-AACAATGGAGAGATTTAGTTGTGTTCCAGTAGACTATATGATGCAACAAATCGACTT 657
Query 708 ATAACTGATAAAATGAGAGCAATACTTATCGATTGGCTCATAGAGGTACATGACAAATTT 767
| ||| || || |||||||||||||| ||||| ||| | || |||||||||||||| |||
Sbjct 658 A-AAC-GAGAAGATGAGAGCAATACTAATCGACTGGTTAATCGAGGTACATGACAAGTTT 715
Query 768 GAGCTAATGAACGAGACATTGTTTCTAACAGTGAATCTGATAGATAGATTCCTGTCCAAG 827
|| || || ||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 716 GATCTGATAAACGAGACACTGTTTCTGACAGTGAATCTGATAGATAGATTCTTGTCCAAG 775
Query 828 CAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCTTGC 887
||| |||| |||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct 776 CAAAATGTTATGAGAAAGAAGCTTCAGCTTGTAGGGTTAGTAGCTTTGCTGTTAGCTTGT 835
Query 888 AAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAAGCT 947
||||| || |||||||| || ||| |||| |||||||| ||| ||||||||||||||||
Sbjct 836 AAGTATGAGGAGGTTTCGGTTCCTGTTGTCGAAGATTTAGTACTCATTTCGGACAAAGCG 895
Query 948 TATATGAGGAACGAAGTTTTAGAAATGGAGAAGATTATGCTT-AGTACTTTGCAATTCAA 1006
|||| ||||||||| ||| |||| |||||||| | ||| || |||||||||||||||||
Sbjct 896 TATACGAGGAACGATGTTCTAGAGATGGAGAAAACAATG-TTGAGTACTTTGCAATTCAA 954
Query 1007 TATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCAGA 1066
||| |||||||| || |||||||| |||||||| || |||||||||||||||||| ||||
Sbjct 955 TATCTCGTTACCGACACAATACCCGTTCTTGAAAAGATTCCTCAAGGCAGCTCAAGCAGA 1014
Query 1067 CAAGAAGCT-TGAGATCTTGGCGTCGTTCTTGATCGAGCTTGCTCTTGTGGACTACGAAA 1125
||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1015 CAAGAAG-TGTGAGGTCTTGGCGTCGTTCTTGATCGAGCTTGCCCTTGTGGAGTACGAGA 1073
Query 1126 TGGTTCGGTATCCACCATCGTTGCTAGCCGCCAC-TGCAGTGTACACAGCTCAATGTACA 1184
|| |||||| ||||||||| || ||||| ||||| | | |||||||| ||||||||||||
Sbjct 1074 TGCTTCGGTTTCCACCATCATTACTAGCTGCCACAT-CTGTGTACACTGCTCAATGTACA 1132
Query 1185 ATCCATGGCTTC-AGTGAA-TGGAACAGCACTTGTGAATTCCACAGTCACTACTCTGAAA 1242
| |||| ||| || ||| |||||||| || ||||||||||| |||| |||||||||
Sbjct 1133 CTTGATGG-TTCCAG-GAAATGGAACAGTACATGTGAATTCCATTGTCATTACTCTGAAG 1190
Query 1243 ATCAACTCATAGAATGTTGTA-G-AAGAATGGTGAGACTACATCAGAAGGCTGG-GACTG 1299
| || ||||| ||||||| | | ||| ||||||| || ||||||| ||| || ||| |
Sbjct 1191 ACCAGCTCATGGAATGTTC-ACGGAAGC-TGGTGAGTCTGCATCAGAGGGC-GGCGACAG 1247
Query 1300 ATAAACT-AACAGGAATACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACA 1358
||||| ||||||| || |||| || |||||| | |||||| || |||||||||| |
Sbjct 1248 G-AAACTTAACAGGAGTATATAGGAAGTACAGCACAAGCAAATTTGGTTACATAGCAA-A 1305
Query 1359 AAGTATGAAGCTGCACACTTTCTTGTGTCAGATTCTCA 1396
| || ||||||||||||||||| ||||| || |||||
Sbjct 1306 ATGT--GAAGCTGCACACTTTCTAGTGTCTGAGTCTCA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5