BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491086
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35600.2 | Symbols: CONNEXIN 32 | Protein kinase superfamily... 2231 0.0
AT1G76360.1 | Symbols: | Protein kinase superfamily protein | ... 139 7e-32
> AT4G35600.2 | Symbols: CONNEXIN 32 | Protein kinase superfamily
protein | chr4:16896202-16898857 FORWARD LENGTH=1652
Length=1652
Score = 2231 bits (1208), Expect = 0.0
Identities = 1404/1493 (94%), Gaps = 35/1493 (2%)
Strand=Plus/Plus
Query 1 TCAAAAATATTTTGCAACCCATCGTTGCCTCTTTCAATAATTCTAAACTCGAGCAATAAA 60
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 73 TCAAAATTATTTTGCAACCCATCGTTGCCTCTTTCAATAGTTCTAAACTCGAGCAATAAA 132
Query 61 AGCTCAAAT-AACTAACTGACTTGAGATCCATATCCACTAGCTCTTGTCTGAATTGGTaa 119
| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AACTCAAATAAACCAACTGACTTGAGATCCATATCCACTAGCTCTTGTCTGAATTGGTAA 192
Query 120 aacaagaaagacaagaacaagaagaaaaagaagaagaaagagaagGCTCA-T-G-AA--- 173
|||||| ||| ||| |||||||| ||||||||||||||||||||||| | | ||
Sbjct 193 AACAAG-AAG--AAG---AAGAAGAAGAAGAAGAAGAAAGAGAAGGCTCATTAGAAATTG 246
Query 174 ATGGGTGTTTGTATTTCATT-TTTCTCCTCTTCCTCTCCTTCCACAACAGGTCTCCATAG 232
||||||| ||||||||| || ||| || |||||||||||||||| |||||||||||||||
Sbjct 247 ATGGGTGCTTGTATTTCGTTCTTT-TCTTCTTCCTCTCCTTCCAAAACAGGTCTCCATAG 305
Query 233 TCAT---GCCACAACGAACAACCACAGCAATGGAACAGACTTCTCGTCGTTAACGACCAC 289
|||| |||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 306 TCATGCAGCCACAACGAACAACCACAGCAATGGAACAGAGTTCTCGTC----A--ACCA- 358
Query 290 CACGGGCGCGACAACAAGCAGCAGCGTCGGACAACGGAGCCAATTCTCCGATATTTCCGG 349
| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 C-C-GGCGCGACAACAAACAGCAGCGTCGGACAACAGAGCCAATTCTCCGATATTTCCAC 416
Query 350 TGGGATTATAAGTGATTCCGGTAAACTACTGGAATCGCCAAATCTCAAAGTCTATAGCTT 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 TGGGATTATAAGTGATTCCGGTAAACTACTGGAATCGCCAAATCTCAAAGTCTATAACTT 476
Query 410 TCTGGATCTAAAAACGGCGACGAAGAATTTCAAACCGGACTCGATGTTGGGTCAAGGAGG 469
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 477 TCTGGATCTAAAGACGGCGACGAAGAATTTCAAACCGGATTCGATGTTGGGTCAAGGAGG 536
Query 470 ATTCGGGAAAGTATACAGAGGTTGGGTCGATGCCACGACTCTTGCTCCTTCCAGAGTCGG 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTCGGGAAAGTATACAGAGGTTGGGTCGATGCCACGACTCTTGCTCCTTCCAGAGTCGG 596
Query 530 TTCTGGTATGATCGTAGCCATCAAGAGATTGAATTCAGAGAGTGTTCAAGGATTTGCAGA 589
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 597 TTCTGGTATGATCGTTGCCATCAAGAGATTGAATTCTGAGAGTGTTCAAGGATTTGCAGA 656
Query 590 GTGGCGTTCAGAAGTTAACTTCTTGGGTATGCTTTCACACCGAAATCTGGTGAAGTTGTT 649
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 657 GTGGCGTTCAGAAGTTAACTTCTTGGGAATGCTTTCGCACCGAAATCTGGTGAAGTTATT 716
Query 650 GGGTTACTGTCGTGAAGACAAAGAGCTTCTCCTTGTCTATGAGTTCATGCCCAAAGGAAG 709
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 GGGATACTGTCGTGAAGACAAAGAGCTTCTCCTTGTCTACGAGTTCATGCCCAAAGGAAG 776
Query 710 CCTTGAGAGTCATCTTTTTAGACGAAACGATCCTTTTCCTTGGGACTTAAGGATCAAGAT 769
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TCTTGAGAGTCATCTTTTTAGACGAAACGATCCTTTTCCTTGGGATTTAAGGATCAAGAT 836
Query 770 TGTGATCGGTGCAGCTCGTGGGCTTGCGTTTCTACACAGCTTACAAAGAGAAGTCATCTA 829
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGTGATTGGTGCAGCTCGTGGCCTTGCGTTTCTACACAGCTTACAAAGAGAAGTCATCTA 896
Query 830 TAGAGACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATGACGCAAAGCTTTCAGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAGAGACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATGACGCAAAGCTTTCAGA 956
Query 890 TTTCGGATTAGCAAAGCTAGGACCAGCAGACGAGAAGTCACACGTTACAACTAGGATCAT 949
||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 957 TTTCGGACTAGCAAAGCTAGGACCAGCAGATGAGAAGTCACACGTCACGACTAGGATCAT 1016
Query 950 GGGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAG 1076
Query 1010 TGACGTATTCGCCTTTGGTGTGGTTTTACTAGAAATAATGACCGGACAGACAGCGCACAA 1069
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1077 TGACGTATTCGCCTTTGGTGTGGTTTTACTAGAAATAATGACCGGACTGACGGCGCACAA 1136
Query 1070 CACAAAACGGCCGAGAGGACAAGAGAGTCTTGTCGACTGGTTAAGACCAGAACTCTCAAG 1129
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CACAAAACGGCCCAGAGGACAAGAGAGTCTTGTCGACTGGTTAAGACCAGAACTCTCAAA 1196
Query 1130 CAAACACAGAGTGAAACAAATAATGGACAAAGGAATCAAAGGTCAATACACAACCCAAG- 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 CAAACACAGAGTGAAACAAATAATGGACAAAGGAATCAAAGGTCAATACACAACC-AAGG 1255
Query 1189 TCGCGACCGAAATGGCACGTATTACACTTTCTTGTATCGAGCCAGACCCGAAAAACCGAC 1248
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 1256 TCGCGACCGAAATGGCACGCATTACACTCTCTTGTATCGAGCCAGACCCAAAAAACCGAC 1315
Query 1249 CACACATGAAGGACGTAGTCGACGTTCTCGAACACATCCAACGGCTTAATGTTGTCCCTA 1308
||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1316 CACACATGAAGGAAGTAGTCGAAGTCCTCGAACACATCCAAGGGCTTAATGTTGTCCCTA 1375
Query 1309 ACCGTTCTTCCACTAAACAGGCCGTTTCTAGCTCTTCACGTTCTTCGCCACATCACTATC 1368
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1376 ACCGTTCTTCCACTAAACAGGCCGTTGCTAACTCTTCACGTTCTTCGCCACATCACTATC 1435
Query 1369 ACTATAGAGCTGGCGGAATTGGGGCTGAACGCAAGAGAGCAACGCCTGGACGGTTTGGA- 1427
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GCTATAAAGCTGGCGCACTTGGGGCTGAACGCAAGAGAGCAACGCCTGGACGGTTTGGAT 1495
Query 1428 --GTAGAAAAAGAAATGGTT-TCTTGATAT-TTGTTTTTCCGGCGGTATGAAA 1476
||||||||| |||| ||| | ||| ||| || |||||||||||||||||||
Sbjct 1496 CAGTAGAAAAATAAATAGTTGT-TTGGTATCTTTTTTTTCCGGCGGTATGAAA 1547
> AT1G76360.1 | Symbols: | Protein kinase superfamily protein
| chr1:28643038-28646712 REVERSE LENGTH=1888
Length=1888
Score = 139 bits (75), Expect = 7e-32
Identities = 328/445 (74%), Gaps = 37/445 (8%)
Strand=Plus/Plus
Query 609 TTCTT-GGGTATGCTTTCA-CA-CCGAAATCTGGTGAAGTTGTTGGGTTACTGTC-GTGA 664
||||| ||| | | ||||| || || |||| |||||||| | |||||||| || | | ||
Sbjct 887 TTCTTAGGG-AAG-TTTCATCATCC-AAATTTGGTGAAGCTCTTGGGTTATTG-CTGGGA 942
Query 665 AGACAAAGAGCTT-CTCCTT-GTCTATGAGT-TCATGCCCAAAGGAAGCCTTGAGAGTCA 721
||| || || || || || |||||||||| | |||| |||||||||||||| | |||
Sbjct 943 AGAGAACCAG-TTCCT-TTTGGTCTATGAGTAT-TTGCCTAAAGGAAGCCTTGAAAATCA 999
Query 722 --TCTTTTTAGACGAAAC-GATCCTTTTCCTTGGGACTTA-A-GGATCAAGATTGTGATC 776
|||| | | | | | | || | || |||||||| || | | | ||||| | ||
Sbjct 1000 CCTCTTCTCAAAAGGAGCAGAGGCATTACCTTGGGA--TACACGTTTGAAGATAGCCATT 1057
Query 777 GGTGCAGCTCGTGGGCTTGCGTTTCTACACAGCTTAC-A-AAGAGAAGTCATCTATAGAG 834
| ||||||| || ||| | ||| | || | | | | | ||||| || ||||||||||
Sbjct 1058 GAAGCAGCTCAAGGACTTACCTTTTTGCATAAC-TCCGAGAAGAG-TGTTATCTATAGAG 1115
Query 835 ACTTCAAAGCTTCCAATATACTTCTTGATTCGAACTATG-ACGCAAAGCTTTCAGATTTC 893
||||||||||||||||||| ||||| ||||| |||| | |||| ||||||||||| |||
Sbjct 1116 ACTTCAAAGCTTCCAATATTCTTCTCGATTCCAACT-TCCACGCCAAGCTTTCAGACTTC 1174
Query 894 GGATTAGC-AAAGCTAGGACCAGCAGACGAGAAG-TCACACGTTACAACTA-G-GATCAT 949
||| |||| ||| | || ||| | | | || |||||||| || || | | | ||||
Sbjct 1175 GGACTAGCTAAAAATGGGCCCATTA-ATG-GATTCTCACACGTGACCAC-ACGTG-TCAT 1230
Query 950 GGGCACATATGGTTATGCTGCTCCTGAATATATGGCAACAGGCCATTTATACGTTAAGAG 1009
||||||| | || ||||| ||||| || || ||||| ||||| ||| |||| || | |||
Sbjct 1231 GGGCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAG 1290
Query 1010 TGACGTATT-CGCCTTTGGTGTGGT 1033
||| || || || ||||| |||||
Sbjct 1291 TGATGT-TTACGGGTTTGGAGTGGT 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5