BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491087
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35590.1 | Symbols: | RWP-RK domain-containing protein | ch... 1290 0.0
> AT4G35590.1 | Symbols: | RWP-RK domain-containing protein |
chr4:16892909-16894865 FORWARD LENGTH=1113
Length=1113
Score = 1290 bits (698), Expect = 0.0
Identities = 944/1053 (90%), Gaps = 56/1053 (5%)
Strand=Plus/Plus
Query 1 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTGACCTCACTCGCCG 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 86 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTAACCTCACTCGCCG 145
Query 61 TTTTCCAGAGCGTCACCCGTAAAGAGATGATGAGGAGTTTGCATGTGTATGGATCGGTGG 120
||||||||||||||| ||| ||||||||| |||||||||||||||| |||| ||||||||
Sbjct 146 TTTTCCAGAGCGTCATCCGCAAAGAGATGGTGAGGAGTTTGCATGTCTATGAATCGGTGG 205
Query 121 AGATTGAGAGAGAGTTCTTGTTCAAGAGTAAAAGCTGTTATGTAGAGAAGAGAGCGAAGC 180
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 206 AGATTGAGAGAGAGTTCTGGTTCAAGAGCAAAAGCTGTTATGTAGAGAAGAAAGCGAAGC 265
Query 181 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 325
Query 241 CGTGGCGTTGTATCTTTGTCTTCCGGTTTACTCACTCGCTTCCTCGGTTTCCTACTCTTC 300
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 326 CGTGGCGTTGTATCTTTGTGTTCCGGTTTAATCACTCGCTTCCTCGGTTTCCTACTCTTC 385
Query 301 TCTGTCTTTCAAGAAA-CCCTAAGCTGGAGGACATCCCTAATTTAGCCAATGAGCTCAAG 359
|||||||||| ||||| ||| || |||||||||||||||||||||||||| |||||||||
Sbjct 386 TCTGTCTTTCCAGAAATCCCAAA-CTGGAGGACATCCCTAATTTAGCCAACGAGCTCAAG 444
Query 360 TTTATCTCCGAGTTAAATACGAAGAAACCATCAAAGATTTCTGAAGAAGAACAAATTTCT 419
||||||||||||||||| || | ||||||||||| ||||||||||||| | |
Sbjct 445 TTTATCTCCGAGTTAAA-AC-------C-ATCAAAGATTTATGAAGAAGAACAA-TG-C- 492
Query 420 GAAGATGAACAGTGCAGTACAGACG-AGTATTATAACTCTGATCTGCCTAAACCGCGAAA 478
| | | | | ||||||||| | | |||||||||||||||||||||||||| |||||
Sbjct 493 -A-G-T-A---G--CAGTACAGAGGGA-TATTATAACTCTGATCTGCCTAAACCACGAAA 542
Query 479 GCTCGTTTTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAACATTCG-G-AA 536
||||||| ||||||||||||||||||||||||||||||||||||||||| | || | ||
Sbjct 543 GCTCGTTCTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAA--TCCGAGGAA 600
Query 537 TCCGAAAACGAAAAAACTGAGCATTCGGAATC--A----GATG---CT-AA--GTCTGA- 583
|| | |||||||||||| || |||||||||| | ||| || || ||| ||
Sbjct 601 TCTGTAAACGAAAAAACCGAACATTCGGAATTTGAAAACGATAAAACTGAACAGTCGGAA 660
Query 584 ---GATTTTG-GA--GAG-----GAAGAAGATGA-G-G-ACAACATCCAGACATGTTGCT 629
||| | || ||| |||||||| || | | ||| |||| ||||||||||||
Sbjct 661 TCAGATGCTAAGACTGAGATTTTGAAGAAGAAGAAGAGGACACCATCGAGACATGTTGCT 720
Query 630 GAACTTTCCTTAGAAGATCTTTCAAAATATTTTGGTCTTACTATCGTGGAAGCTTCTCGG 689
||||| ||||||||||| ||||||||||| |||| || |||||||||||||||||||||
Sbjct 721 GAACTATCCTTAGAAGAGCTTTCAAAATACTTTGACCTCACTATCGTGGAAGCTTCTCGG 780
Query 690 AATCTCAATGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCCCGG 749
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 AATCTCAAGGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCACGG 840
Query 750 TGGCCTCATAGGAAGATCAAATCTCTCGACAGTCTCATCCAAGATCTTCAGAGGGAAGCA 809
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 841 TGGCCTCATAGGAAGATCAAATCTCTCGACTGTCTCATCCACGATCTTCAGAGGGAAGCA 900
Query 810 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTATGAAACAGGAGAAA 869
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTAAGAAACAGGAGAAA 960
Query 870 CTGGAGACAGAGAAGAGAAATATAGTGATGAGACCATTCATGGAGATACAGACAGAAACC 929
|||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 961 CTGGAGACAGAGAAGAGAAATATAGTGAAGAGACCATTCATGGAGATAGGGATAGAAACC 1020
Query 930 AAGAAATTCAGACAAGACAACTTCaaaaaaaGACACAGAGCTTCTAGAGCCAAGAAGAAT 989
|| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1021 AAAAAATTCAGACAAGAAAACTTCAAGAAAAGACACAGGGCTTCTAGAGCCAAGAAGAAT 1080
Query 990 CAAGAAACTCTTGTCACTTCCTCTTCCACTTAA 1022
|||||| ||||||||||||||||||||||||||
Sbjct 1081 CAAGAATCTCTTGTCACTTCCTCTTCCACTTAA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5