BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491087 Length=1022 Score E Sequences producing significant alignments: (Bits) Value AT4G35590.1 | Symbols: | RWP-RK domain-containing protein | ch... 1290 0.0 > AT4G35590.1 | Symbols: | RWP-RK domain-containing protein | chr4:16892909-16894865 FORWARD LENGTH=1113 Length=1113 Score = 1290 bits (698), Expect = 0.0 Identities = 944/1053 (90%), Gaps = 56/1053 (5%) Strand=Plus/Plus Query 1 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTGACCTCACTCGCCG 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 86 TCTGCTTTTGCGACTCTTGGTCTTCTTCGGACATGGCACATTCCTTAACCTCACTCGCCG 145 Query 61 TTTTCCAGAGCGTCACCCGTAAAGAGATGATGAGGAGTTTGCATGTGTATGGATCGGTGG 120 ||||||||||||||| ||| ||||||||| |||||||||||||||| |||| |||||||| Sbjct 146 TTTTCCAGAGCGTCATCCGCAAAGAGATGGTGAGGAGTTTGCATGTCTATGAATCGGTGG 205 Query 121 AGATTGAGAGAGAGTTCTTGTTCAAGAGTAAAAGCTGTTATGTAGAGAAGAGAGCGAAGC 180 |||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct 206 AGATTGAGAGAGAGTTCTGGTTCAAGAGCAAAAGCTGTTATGTAGAGAAGAAAGCGAAGC 265 Query 181 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 CTCTGTTTCGTTCGGAAGATTTCCGGCGACCGGAGATCTCGGAAGGGTCGGTTTTTGGCA 325 Query 241 CGTGGCGTTGTATCTTTGTCTTCCGGTTTACTCACTCGCTTCCTCGGTTTCCTACTCTTC 300 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 326 CGTGGCGTTGTATCTTTGTGTTCCGGTTTAATCACTCGCTTCCTCGGTTTCCTACTCTTC 385 Query 301 TCTGTCTTTCAAGAAA-CCCTAAGCTGGAGGACATCCCTAATTTAGCCAATGAGCTCAAG 359 |||||||||| ||||| ||| || |||||||||||||||||||||||||| ||||||||| Sbjct 386 TCTGTCTTTCCAGAAATCCCAAA-CTGGAGGACATCCCTAATTTAGCCAACGAGCTCAAG 444 Query 360 TTTATCTCCGAGTTAAATACGAAGAAACCATCAAAGATTTCTGAAGAAGAACAAATTTCT 419 ||||||||||||||||| || | ||||||||||| ||||||||||||| | | Sbjct 445 TTTATCTCCGAGTTAAA-AC-------C-ATCAAAGATTTATGAAGAAGAACAA-TG-C- 492 Query 420 GAAGATGAACAGTGCAGTACAGACG-AGTATTATAACTCTGATCTGCCTAAACCGCGAAA 478 | | | | | ||||||||| | | |||||||||||||||||||||||||| ||||| Sbjct 493 -A-G-T-A---G--CAGTACAGAGGGA-TATTATAACTCTGATCTGCCTAAACCACGAAA 542 Query 479 GCTCGTTTTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAACATTCG-G-AA 536 ||||||| ||||||||||||||||||||||||||||||||||||||||| | || | || Sbjct 543 GCTCGTTCTGAAACAAGATCTTAACTGCCTTCCTGATTCAGAAACCGAA--TCCGAGGAA 600 Query 537 TCCGAAAACGAAAAAACTGAGCATTCGGAATC--A----GATG---CT-AA--GTCTGA- 583 || | |||||||||||| || |||||||||| | ||| || || ||| || Sbjct 601 TCTGTAAACGAAAAAACCGAACATTCGGAATTTGAAAACGATAAAACTGAACAGTCGGAA 660 Query 584 ---GATTTTG-GA--GAG-----GAAGAAGATGA-G-G-ACAACATCCAGACATGTTGCT 629 ||| | || ||| |||||||| || | | ||| |||| |||||||||||| Sbjct 661 TCAGATGCTAAGACTGAGATTTTGAAGAAGAAGAAGAGGACACCATCGAGACATGTTGCT 720 Query 630 GAACTTTCCTTAGAAGATCTTTCAAAATATTTTGGTCTTACTATCGTGGAAGCTTCTCGG 689 ||||| ||||||||||| ||||||||||| |||| || ||||||||||||||||||||| Sbjct 721 GAACTATCCTTAGAAGAGCTTTCAAAATACTTTGACCTCACTATCGTGGAAGCTTCTCGG 780 Query 690 AATCTCAATGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCCCGG 749 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 781 AATCTCAAGGTCGGTCTCACTGTTTTGAAAAAGAAATGCAGAGAGTTTGGGATTCCACGG 840 Query 750 TGGCCTCATAGGAAGATCAAATCTCTCGACAGTCTCATCCAAGATCTTCAGAGGGAAGCA 809 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 841 TGGCCTCATAGGAAGATCAAATCTCTCGACTGTCTCATCCACGATCTTCAGAGGGAAGCA 900 Query 810 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTATGAAACAGGAGAAA 869 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 901 GAGAAGCAGCAGGAAAAGAATGAAGCAGCAGCAATGGCGGTAGCTAAGAAACAGGAGAAA 960 Query 870 CTGGAGACAGAGAAGAGAAATATAGTGATGAGACCATTCATGGAGATACAGACAGAAACC 929 |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| Sbjct 961 CTGGAGACAGAGAAGAGAAATATAGTGAAGAGACCATTCATGGAGATAGGGATAGAAACC 1020 Query 930 AAGAAATTCAGACAAGACAACTTCaaaaaaaGACACAGAGCTTCTAGAGCCAAGAAGAAT 989 || |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1021 AAAAAATTCAGACAAGAAAACTTCAAGAAAAGACACAGGGCTTCTAGAGCCAAGAAGAAT 1080 Query 990 CAAGAAACTCTTGTCACTTCCTCTTCCACTTAA 1022 |||||| |||||||||||||||||||||||||| Sbjct 1081 CAAGAATCTCTTGTCACTTCCTCTTCCACTTAA 1113 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50083444559 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5