BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491088
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35580.2 | Symbols: NTL9 | NAC transcription factor-like 9 |... 2134 0.0
> AT4G35580.2 | Symbols: NTL9 | NAC transcription factor-like 9
| chr4:16888405-16890801 REVERSE LENGTH=1791
Length=1791
Score = 2134 bits (1155), Expect = 0.0
Identities = 1478/1624 (91%), Gaps = 62/1624 (4%)
Strand=Plus/Plus
Query 1 AGAGAGTGTATTCAAAGTCGGAAAGAAACCCTAAAGAAGAGGATTGATTATGGGTGCTGT 60
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 13 AGAGAGTGTATTCAAAGTCGGAAAGAAACCCTAAAGAAGA-G---GATTATGGGTGCTGT 68
Query 61 ATCGATGGATTCGCTTCCTCTAGGTTTCAGATTCAGACCTACCGATGAAGAGCTCGTCAA 120
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATCGATGGAGTCGCTTCCTTTAGGTTTCAGATTCAGACCTACCGATGAAGAGCTCGTCAA 128
Query 121 TCACTACCTCCGTCTCAAGATCAACGGACGTCACTCCGATGTCCGTGTCATCCCTGACAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 TCACTACCTCCGTCTCAAGATCAACGGACGTCACTCCGATGTCCGTGTCATCCCTGATAT 188
Query 181 CGATGTCTGCAAATGGGAACCTTGGGATCTTCCTGCTCTCTCGGTGATTAAGACGGATGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CGATGTCTGCAAATGGGAACCTTGGGATCTTCCTGCTCTCTCGGTGATTAAGACGGATGA 248
Query 241 TCCAGAGTGGTTCTTTTTCTGCCCTCGTGATCGGAAATACCCCAACGGTCATCGCTCTAA 300
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 249 TCCAGAGTGGTTCTTTTTCTGCCCTCGTGATCGGAAATACCCTAATGGTCATCGCTCTAA 308
Query 301 CAGAGCCACTGACTCTGGTTATTGGAAAGCTACTGGTAAAGATCGTAGCATCAAGTCCAA 360
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 CAGAGCAACTGACTCTGGCTATTGGAAAGCTACTGGTAAAGATCGTAGCATCAAGTCTAA 368
Query 361 GAAGACTTTAATCGGTATGAAGAAGACTCTTGTCTTCTATCGCGGACGAGCTCCTAAAGG 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 369 GAAGACTTTAATCGGTATGAAGAAGACTCTTGTCTTCTATCGTGGACGAGCTCCTAAAGG 428
Query 421 TGAGCGCACCAATTGGATTATGCACGAGTATCGTCCCACTCTTAAGGACCTTGATGGCAC 480
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 429 TGAGCGGACTAATTGGATTATGCACGAGTATCGTCCCACTCTTAAGGATCTTGATGGCAC 488
Query 481 TTCCCCTGGCCAAAGCCCCTACGTTCTTTGTCGCCTCTTCCACAAGCTTGATGATCGTGT 540
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 489 TTCCCCTGGCCAAAGCCCTTACGTTCTTTGTCGCCTCTTCCACAAGCCTGATGATCGGGT 548
Query 541 TAATGGTGTCAAGTCCGATGAAGCAGCTCCTACGACCTGCAACAAATACTCACCTGATGA 600
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 549 TAATGGTGTCAAGTCCGATGAAGCAGCTTTTACGGCCAGCAACAAATACTCACCTGATGA 608
Query 601 CACATCATCTGATCTTGTCCAAGAAACACCTTCCTCTGATGCTGCAGTGGAGAAACCATC 660
||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 609 TACATCATCTGATCTTGTTCAAGAAACACCTTCCTCTGATGCTGCTGTTGAGAAACCATC 668
Query 661 AGATTATTCAGGTGGATGCGGCTATGCTCAAAGTAATACT---GCAGATGGGGCAATGAT 717
||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||
Sbjct 669 AGATTATTCAGGTGGATGCGGTTATGCTCATAGTAATAGTACCGCAGATGGGACAATGAT 728
Query 718 TGAGGAGGCACCTGAAGAGAATCTATGGTTACCTTGTGACCTTGAAGATCAAAGGGCACC 777
||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 729 TGAGG---CACCTGAAGAGAATCTTTGGTTATCTTGTGACCTTGAAGATCAAAAGGCACC 785
Query 778 ACTACCGCGTATGGATTATACATATGCTGGTGATTTCAGTTATGATGAGATTGGATTCCA 837
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 786 ACTACCGTGTATGGATTCTATATATGCTGGTGATTTCAGTTACGATGAGATTGGATTCCA 845
Query 838 ATTTCAAGATGGGACCAGCGAACCAGATGTATCACTTACAGAATTGTTGGAGGAGGTGTT 897
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 846 ATTTCAAGATGGTACCAGCGAACCAGATGTATCACTAACAGAATTGTTGGAGGAGGTGTT 905
Query 898 CAATAACCCTGATGACTTCTCTTGCGAGGAATC-AGTCAGTCGAGAGAA-C-A-CAGT-T 952
||||||||||||||||||||||||||||||||| | ||||||||||||| | | |||| |
Sbjct 906 CAATAACCCTGATGACTTCTCTTGCGAGGAATCGA-TCAGTCGAGAGAATCCAGCAGTCT 964
Query 953 GCACCAAATGGGATCTTTTCATCTTCTAAAATACTGCAATCTCCAGCACCAGAGGATGTT 1012
||||||||||||| ||||||||| ||||||| ||||| ||| ||||||||||||||| |
Sbjct 965 -CACCAAATGGGATATTTTCATCTGCTAAAATGCTGCAGTCTGCAGCACCAGAGGATGCT 1023
Query 1013 TTCTTCAACGACTTTATGGCTTACACTAATACAGATGCCGAGATGGGGCAATTGCAGTAT 1072
|||||||||||||| ||||||| |||| |||||||||| ||||||| |||||||||||||
Sbjct 1024 TTCTTCAACGACTTCATGGCTTTCACTGATACAGATGCTGAGATGGCGCAATTGCAGTAT 1083
Query 1073 GATTCA-AATGGCGGAGCTTCTGGATGGCCAAGGGAC--TA-T--A-------GTGATTT 1119
| |||| || || ||||||||||| |||||||| ||| || | | |||||||
Sbjct 1084 GGTTCAGAA-GGTGGAGCTTCTGGTTGGCCAAGTGACACTAATTCATACTATAGTGATTT 1142
Query 1120 GGTTCATCCAGAGCAGATGCTCAATCATAACACCGAGAACAACCTCACAGAAGGGAGGGG 1179
|||||| | |||||| ||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1143 GGTTCAGCAAGAGCAAATGATCAATCATAACACAGAGAACAACCTCACAGAAGGGAGAGG 1202
Query 1180 GATAAAGATCCGGGCTCGACAGCCTCAGAACCGGCAGAGTACAGGATTAATAAACCAGGG 1239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1203 GATAAAGATCCGGGCTCGACAGCCTCAGAACCGGCAGAGTACAGGATTGATAAACCAGGG 1262
Query 1240 CATTGCGCCAAGGAGAATCCGTCTGCAGTTGCAGTCTAGCTCTGAAGTAAATCAGC-AGG 1298
||||| ||||||||||||||||||||| ||||||||| |||||||||||| | | ||
Sbjct 1263 TATTGCTCCAAGGAGAATCCGTCTGCAGCTGCAGTCTAACTCTGAAGTAAAAGAACGAG- 1321
Query 1299 AGGAGGTGAATGAAGGACACACTGTTATTCCCGAGGTACGAGAGAC-CAA-AG--AAGTT 1354
|||||||||||||||||||||||||||||||||||| | | ||| | || || |
Sbjct 1322 AGGAGGTGAATGAAGGACACACTGTTATTCCCGAGGC-CAA-AGAAGCTGCAGCTAAATA 1379
Query 1355 GCAGCAGAGAAGAGTGATGCTTTGGTTAAACCTCAAATAAAGCTCAGGGCGCGGGGAACA 1414
| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 -CT-CAGAGAAGAGTGGTTCTTTGGTTAAACCTCAAATAAAGCTCAGGGCGCGGGGAACT 1437
Query 1415 ATAGGCCAAGTAAAAGCAGAGAGAATTGCAGACAACGAG--GT-----------ACAGGT 1461
|||||||||||||||| ||||||| |||||||| ||||| || ||||||
Sbjct 1438 ATAGGCCAAGTAAAAGGAGAGAGATTTGCAGACGACGAGAAGTTTGTTGTGGTTACAGGT 1497
Query 1462 ---G---CAGAGCAGAAAGAGAAGAGGAGCGAATCGATGGAAGGTGGTTGCAACGGTAAT 1515
| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 1498 ACAGGTGCAGAGCAGAAAGAGACGAGGAGGGAAGCGATGGAAGGTGGTTGCAACGGTAAT 1557
Query 1516 GGTGGCAGTGATGGT-GGTGGTAGGGGTGGGTATATGGAGGACACTGGTGAGTTCATGAC 1574
|||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1558 GGTGGCTGTGATGGTTGG-GGTAGGGATGGGTATATGGAGGACACTGGTGAGTTCATGAC 1616
Query 1575 ACAT 1578
||||
Sbjct 1617 ACAT 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5