BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491090
Length=3294
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35560.2 | Symbols: | Transducin/WD40 repeat-like superfami... 5107 0.0
> AT4G35560.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16881362-16887083 FORWARD LENGTH=3558
Length=3558
Score = 5107 bits (2765), Expect = 0.0
Identities = 3084/3239 (95%), Gaps = 18/3239 (1%)
Strand=Plus/Plus
Query 68 TTATAAGTTCACTTGGCCGTTCGATAAAAGATGTTCGTGAAGAAGTTGGTCGAAATAGCA 127
||||||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 171 TTATAAGTTAACTTCACCGTTGGATAAAAGATGTTCGTGAAGAAGTTGGTCGAGATAGCA 230
Query 128 GCGAAGAAGCCTGGAGGAAGCTCAACGGAAGGACTGAGAGCTAATGACGTTGAGCCACGT 187
|| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 231 GCCAAGAAGCCTGGAGGAAGTTCATCAGAAGGACTGAGAGCTAATGACGTTGAGCCACGT 290
Query 188 GTCGCTCTGCATTATGGAATCCCGTCAGGTTCTCACGTGTTTGCTTATGATCCAATTCAG 247
||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 291 ATCGCTCTGCATTACGGAATCCCTTCAGGTTCTCACTTGTTTGCTTATGATCCATTTCAG 350
Query 248 AAGATCCTCGCTGTTTCCACCAAGGATGGTAGAATCAAACTGTTTGGGAAAGATCAGACT 307
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 351 AAGATCCTCGCCGTTTCCACCAAGGATGGTAGAATCAAGTTGTTTGGGAAAGATCAGACC 410
Query 308 CAGGCTTTACTAGTGTCTGAAGAAACATCCACAAGCAGGTTTCTTGAGTTTGTTCAGAAT 367
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CAGGCTTTGCTAGTCTCTGAAGAAACATCCACAAGCAGGTTTCTTGAGTTTGTTCAGAAC 470
Query 368 CAAGGAATTCTTCTCAATGTGAATGCCAAGAACCAGATTGAGGTTTGGGACTTAGACAAG 427
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 CAAGGAATCCTTCTCAATGTGAATTCCAAGAACCAGATTGAGGTTTGGGACTTAGACAAG 530
Query 428 AAGCTTCTGTCTCATGTTCATCATTTCAAAGGCGAGATCACTTCTTTCCGGGTTATGCAA 487
|||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 531 AAGCTTCTATCTCATGTTCATGTTTTCAATGGCGAGATCACTTCTTTCCGGGTTATGCAA 590
Query 488 CATACCCCTTACTTTTACGTTGGAGATTCTTCTGGTAATGTATCAGTGTTTAAGATCGAA 547
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CATACCCCTTACTTTTATGTTGGAGATTCTTCTGGTAATGTATCAGTGTTTAAGATCGAA 650
Query 548 CAAGATTCTAATCAAGTTATACAAATGGAGTACACTATACCTTACTTAGCATCAAATGGC 607
|||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 651 CAAGATTCTAATCAAGTTATACAACTGGAGTACACCATACCTTACCTAGCATCAAATGGC 710
Query 608 TCTCCCGTTGAAGCTTCTGAGGATACTTCAGTTGTGAGCATTCTACCACAGCCAACAGCT 667
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 TCTCCCATTGAAGCTTCTGAGGATACTTCAGTTGTGAGCATTCTACCACAGCTAACAGCT 770
Query 668 GAAAGCAAGAGGATTCTACTT-GTATTTAGTAGCGGGTTTATAGCGTTATGGGACATCAA 726
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 771 GAAAGCAAGAGGATTCTA-TTGGTATTTAGTAGCGGGTTTATAGCGTTATGGGACATCAA 829
Query 727 AGAAAGCAAACCGATTCTGAAAACAGGAGTACACGGGATGGTAAAGCAAGACACGAAGAA 786
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 830 AGAAAGCAAACCGATTCTCAAAACAGGAGTACACGGTATGGTAAAGCAAGATACGAAGAA 889
Query 787 AGCGACTTGTGCTTGTTGGGTTTGTCCTTCAGGAAGCAGAGTTTCAGTTGGCTATAGCAA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGCGACTTGTGCTTGTTGGGTTTGTCCTTCAGGAAGCAGAGTTTCAGTTGGCTATAGCAA 949
Query 847 TGGTGATATTTTAATATGGAGCATTCCTTCCAAAGGGGAAAGCTCGCCAGAGAGTTCTGC 906
||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 950 TGGAGATATTCTAATATGGAGCATTCCTTCCAAAGGAGAATGCTCGCCAGAGAGTTCTGC 1009
Query 907 TATGATTTGCAAGCTTAACCTCGGATACAAATCCGAGAAGATACCAATAGCTTCTCTGAA 966
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1010 TATGATTTGCAAGCTTAACCTCGGATACAAATCCGAAAAGATACCAATAGCTTCTCTGAA 1069
Query 967 ATGGGTTTATGCTGAAGGGAAAGCAAGCCGGGTTTATGTCATTGGATCATCCTCAAACTC 1026
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1070 ATGGGTTTATGCTGAAGGGAAGGCAAGCCGGGTTTATGTCATTGGATCATCCTCAAACTC 1129
Query 1027 GTTGCAGGTGGTTTTATTGAATGAGCAAACCGAAACTCGGATGATTAAGCTGGGACTTCA 1086
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GTTGCAGGTGGTTTTGTTGAATGAGCAAACCGAAACTCGGATGATTAAGCTGGGACTTCA 1189
Query 1087 TGTGTCTGAGCCTTGTGCTGATATGGAGATGATCATAGCTGATGTTAATGAACAAAGCAA 1146
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1190 TGTTTCTGAGCCTTGTGCTGATATGGAGATGATCATAGCTGATGTTAATGAACAGAGCAA 1249
Query 1147 GCATAAACAAGATTATCTGTTTGTTCTTGGAAAGTCTGGACGTGTGTATGCTTATGATGA 1206
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1250 GCATAAACAAGATTTTCTGTTTGTTCTTGGAAAGTCTGGACGTGTCTATGCTTACGATGA 1309
Query 1207 TTATATGATCGAGAAGTATCTGATTCAATCTCTA-TCCAAATCATCCCCTTCTCTCCCAA 1265
||||||||| ||||||||||||||||| |||| | ||||||||||| ||||| |||||||
Sbjct 1310 TTATATGATTGAGAAGTATCTGATTCAGTCTC-AGTCCAAATCATCTCCTTCCCTCCCAA 1368
Query 1266 AGGAAACTGTGGTTAAGCTGCCATTTTCAGATTCAAGCAGCATCACAGTAGGAAAATTCC 1325
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1369 AGGAAACTGTGGTTAAGCTGCCATTTTCAGATTCAAGCAGCATTACCGTAGGAAAATTCC 1428
Query 1326 TCACAAATCCTTCTCACTTACTTAATCTATCAGATGAGGATTATGCTCAGCTGGCGAAAG 1385
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1429 TCACAAATCCTTCACACTTACTCAATCTATCAGATGAGGATTATGCTCAGCTGGCGAAAG 1488
Query 1386 ATGCTGTGCCGTTTCTTCCTTTTCAGGCAGTTCCAAAGGAAGGTTCCCGTTCTGCACATT 1445
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1489 ATGCTGTGCCGTTTCTTCCTTTTCATACAGTTCCAAAGGAAAGTTCCCGTTCTGCACATT 1548
Query 1446 TTCCTGGTTTCACAAAGGTTAAGAATGTTTACATCACTGGACACAGTGATGGAACCATTG 1505
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 1549 TTCCTGGTTTCACAAAGGTTAAGAATGTTTACATCACAGGACACTGTGACGGAACCATTA 1608
Query 1506 GTGTATGGGACATGACCTGTCCTTTTCTTATTCCTGTCTTGTTTCTGAAAG-A-A-CAGA 1562
|||||||||||||||||||| |||||| |||| ||||||||||||||||| | | ||||
Sbjct 1609 GTGTATGGGACATGACCTGTTCTTTTCCCATTCTTGTCTTGTTTCTGAAAGAACAGCAGA 1668
Query 1563 CCGATCAAGATATATCTTCACGCGGAAATGCGGCATTGACAGCTTTGCATTATGACAGCA 1622
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1669 TAGATCAAGATGTATCTTCACGCGGAAATGCGGCATTGACAGCTTTACATTATGACAGCA 1728
Query 1623 ACTCAAGACTTCTTGTTTCTGGTGATCATAACGGAATGGTTCGCCTTTATAGGTTCAAAC 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 ACTCAAGACTTCTTGTTTCTGGTGATCATAACGGAATGGTTCGCCTTTATAGGTTCAAAC 1788
Query 1683 CTGAGCCATACCTAACAGAAAACAGTTTTATTCCTTTCCAAGGAAG-TTCAAAGAAAGGG 1741
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1789 CTGAGCCATACCTAACAGAAAACAGTTTTATCCCTTTCCAAGGAAGCTT-AAAGAAAGGA 1847
Query 1742 AATAACCATATTGTTCAAAGTGTTAAGTACGTAAAGCTTACTGGTTCCATAACCTGTATT 1801
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1848 AATAACCATATTGTTCAAAGTGTTAAGTACATCAAGCTTACTGGTTCCATAACCTGTATT 1907
Query 1802 CAGAAAAGCCAAAACTCGAAACATCTCGCTATTGGATCAGATCAAGGACATGTTTCTCTG 1861
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 CAGAAGAGCCAAAACTCAAAACATCTCGCTATTGGATCAGATCAAGGACATGTTTCTCTG 1967
Query 1862 GTTGACATTGAGGAAGCAAATGTGATATACACAAAACACATTGGAAGTGTTATATGTCCA 1921
|||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 1968 GTTGACATTGAGGAAGCAAATGTGTTATACACAAAACACATTGCAAGTGATATATGTCCA 2027
Query 1922 GGGATCATCT-CTGTGCAATTTGATTGTTGCAGTGTGCAAGGCTTCGAGAAGAACGTGTT 1980
|||||||||| || ||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 2028 GGGATCATCTCCT-TGCAATTCGAGAGTTGCATTGTGCAAGGCTTCGAGAAGAACGTGTT 2086
Query 1981 AGTGGTCGCTATGAGAGACTCATCAATTTTTGCTCTGGACAGCGACACGGGAAATATGAT 2040
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2087 AGTGGTTGCTATGAGAGACTCGTCGGTTTTTGCTCTGGACAGCGACACGGGAAATATGAT 2146
Query 2041 TGGAACCAACATGATTAAGCCAAAAAAGCCATTCAAGGTTCTATATATGCAGATCCTAGA 2100
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2147 TGGAACCAACATGATTAAGCCTAAAAAGCCATTCAAGGTTCTGTATATGCAGATCCTAGA 2206
Query 2101 TGGAAAACAAGATACTTCAGGAAATGGATTTGATACGAGCAGAGAGAGCACAGTTGAGGA 2160
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 TGGAAAGCAAGATACTTCAGGAAATGGATTTGATACGAGCAGAGAGAGCACAGTTGAGGA 2266
Query 2161 GATTTCGATAAGGCAGCCTTCGGTTTTGGTTTGCTCGGAGAAAGCTATATATATCTACTC 2220
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2267 GATCTCGATAAGGCAGCCTTCGGTTTTGGTTTGTTCGGAGAAAGCTATATATATCTACTC 2326
Query 2221 CCTGGCTCACGTTGTCCAAGGAGTGAAGAAGGTCCTTCACAAGAAAAAGTTCAGTTCTTC 2280
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2327 CTTGGCTCACGTTGTCCAGGGAGTGAAGAAGGTCCTCCACAAGAAAAAGTTCAGTTCTTC 2386
Query 2281 ACCAATATGCTCAGCTTCCACTTTCTATGGAACCTCTGGTGTTGGTCTTACACTTGTTTT 2340
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2387 ACCCATTTGCTCAGCTTCCACATTCTATGGAACCTCTGGTGTTGGTCTTACACTTGTTTT 2446
Query 2341 CACAGATGGAACTGTTGAGATAAGGTCTTTGCCAGAACTCTCCCTGCTAAAACAAACTTC 2400
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2447 CACAGATGGAACTGTTGAGATAAGGTCTTTGCCAGAACTCTCCCAGCTAAAACAAACTTC 2506
Query 2401 CATTAGAGGCTTCACATATTCTTCACCAAAACCAAACTCGTTACCAGAGATTACCATATC 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 CATTAGAGGCTTCACATATTCTTCACCAAAACCAAACTCGTTACCAGAGATTACCATATC 2566
Query 2461 TGCTTCTTGGGATGGAGATCTAGTCATGGTGAATGGAGATGATGAACTCATTGTCAGCTC 2520
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2567 CGCTTCTTGGGATGGAGATCTAGTCATGGTGAATGGAGATGATGAACTTATTGTTAGCTC 2626
Query 2521 AGTTTTACCTCAAAAGGACACATTCAGGCTTGCCGAGTCCATGAGCCGAGTTTACAAGAA 2580
|||||||||||||||||| || || ||||||| ||||||||||| ||||||||||||||
Sbjct 2627 AGTTTTACCTCAAAAGGAAACTTTTAGGCTTGTCGAGTCCATGAATCGAGTTTACAAGAA 2686
Query 2581 AGATAACGCGGTTTGTCACGAAGGAATCATCACTTCATCATCTCCAAGGGAAAAGAAGAG 2640
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2687 AGATAACTCGGTTTGTCACGAAGGAATCATCACATCATCATCTCCAAGGGAAAAGAAGAG 2746
Query 2641 TATGTTTGGTTCTGTTTTCAAGACTAAATCGAAGCGCGCAACTGATACAGAACCAGAAAG 2700
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2747 TATGTTTGGTTCTGTTTTCAAGACTAAATCAAAGCGCACAACTGATACAGAACCAGAAAG 2806
Query 2701 CTCCAAGGAAACCG-TCGAGGAGCTGTCTAAAATCTT-TGCAACAGCTAATTTCCCATGG 2758
||||||||||| || |||||||||||||||||||||| | | |||||||||||||| |||
Sbjct 2807 CTCCAAGGAAA-CGATCGAGGAGCTGTCTAAAATCTTCT-CTACAGCTAATTTCCCCTGG 2864
Query 2759 AACAACAATGTTGAGAGTAGTAGAGAGATCAATACAGTTACTAGAGTGGACGATGAAGAA 2818
|||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 2865 AACAACAATGTTGAGAATAGTAGAGAGATCAATACAATTACTAGGGTGGAAGATGAAGAA 2924
Query 2819 GAGTTGGACATAGATGACATTGACATCGACGATCATCATCATAGT---CAACAACAAGAG 2875
|||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||
Sbjct 2925 GAGTTGGACATAGATGACATTGACATTGACGATCATCATCCTAATCAACAACAACAAGAG 2984
Query 2876 AAGCCTAAAGAACAAGGGATATTGTCAGGGCTTAGTAAACAGAAAATGGCGAATAGGTTT 2935
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2985 AAGCCTAAAGAACAAGGGATATTGTCAGGGCTTAGTAAACAGAAGATGGCGAATAGGTTT 3044
Query 2936 AGCAATTTCAAAGGTAAGCTGAAACAGATGGCAGCTAAGAATGAGAAGAGTGTTGTAATT 2995
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045 AGTAATTTCAAAGGTAAGCTGAAACAGATGGCAGCTAAGAATGAGAAGAGTGTTGTAACC 3104
Query 2996 AATGACGAAAAGCATGAGGAGAAAAATGGCGCCACAGTTGATCAGATCAAGAAGAAATAC 3055
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3105 AATGACGAGAAGCATGAGGAGAAAAACGGCGCCACAGTTGATCAGATCAAGAAGAAATAC 3164
Query 3056 GGGTTTACCTCGTCCGAGGAAATGGGAGCTGCCAAAATGGCTCAGAGCAAACTTCAAGAC 3115
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3165 GGGTTTACCTCGTCCGATGAAATGGGAGCTGCCAAAATGGCTCAGAGCAAACTTCAAGAC 3224
Query 3116 AACCTGAAAAAGTTACAGGGAATTAGCTTGAGGACGACGGAAATGGAAGATACTGCAAAG 3175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3225 AACCTGAAAAAGTTACAGGGAATTAGCTTGAGGACGACGGAAATGGAAGATACTGCAAAG 3284
Query 3176 TCTTTCTCCTCTACGGCAAAGGAACTACTAAGTGCGGTTGAGTTCAATAAACAGAGCTCA 3235
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 3285 TCTTTCTCCTCTACGGCAAAGGAACTACTAAACGCTGTTGAGTTCAATAAACAGAGCTCA 3344
Query 3236 AAACCTTAGCAGTCTTTTACTCGGGATGTCAAAATTAGCTACTGTAAATACTTTCTTCA 3294
||| ||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 3345 AAATCTTAGCACTCTTTTTCTCTGGATGTCAAAATTACCTACTGTAAATACTTTCTTCA 3403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163895402781
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5