BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491092
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35540.1 | Symbols: | zinc ion binding;transcription regula... 2379 0.0
> AT4G35540.1 | Symbols: | zinc ion binding;transcription regulators
| chr4:16873835-16875598 FORWARD LENGTH=1764
Length=1764
Score = 2379 bits (1288), Expect = 0.0
Identities = 1566/1699 (92%), Gaps = 24/1699 (1%)
Strand=Plus/Plus
Query 1 TCTCGATTCGCCGGCGATCCGAATTTCATTCTTCTTCTGCTTATCGGGGGaaaaaaaaaa 60
|||||||||||||||||||||||| ||| ||||||||||| || |||||||||||
Sbjct 16 TCTCGATTCGCCGGCGATCCGAATCTCA---TTCTTCTGCTTGTC---GGAAAAAAAAAC 69
Query 61 CC-TAATTTAAAGTTTGAAGCTTTAGGTTTGAATCATGCGTTGCAAGGGATGCAATAGAA 119
|| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 70 CCGTAATTTAAAGTGTGAAGCTTTCGGTTTGAATCATGCGTTGCAAGAGATGCAATGGAA 129
Query 120 GCAACTTTGTACGCGACGAAGTCACAGGGAATACGCATTGCGGTGGATGTGGGACATTAC 179
||||||||| ||||||||||| ||| |||||| || ||||||||||||||||||||||||
Sbjct 130 GCAACTTTGAACGCGACGAAGACACGGGGAATTCGTATTGCGGTGGATGTGGGACATTAC 189
Query 180 GAGAGTACGATAATTATGAGGCACACCTTGGCCCCATAGGAGGACCTCAAGGTACATTTA 239
||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||| ||
Sbjct 190 GAGAGTATGATAATTATGAGGCACAACTTGGCGGCATAAGAGGACCTCAAGGTACATATA 249
Query 240 TACGAGTAGGCACCATTGGTATAGGCTCTGTTCTTGCTTATAAAGAGAAGAAGATCTATG 299
||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 250 TACGAGTAGGCACCATTGGTAGAGGCTCTGTTCTTGATTATAAAGACAAGAAGATCTATG 309
Query 300 AAGCCAACAATTTGATTGAGGCTATTACAGAGAGATTAG-ATCTTGGTTATAAAACTGAA 358
||||||||||||| ||||||| | ||||| ||||| | |||||||| |||||||||||
Sbjct 310 AAGCCAACAATTTAATTGAGGAGACAACAGAAAGATT-GAATCTTGGTAATAAAACTGAA 368
Query 359 GCGATTAAGAGTATGATTTA-TTATATTACTGATGGGGAATTTGGACAAGGTGAGTGGTT 417
| |||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||
Sbjct 369 GTGATTAAGAGTATGA-TTAGTAAGCTTACTGATGGGGAATTTGGACAAGGTGAGTGGTT 427
Query 418 CCCGATTTTGATTGGGGCGTGTTGTTATGCTGTGGTGAGAAAAGAAGGGAAAGGTGTTTT 477
||| ||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 428 CCCTATTTTGATTGGAGCTTGTTGTTATGCTGTGGTAAGAGAAGAAGGGAAAGGTGTTTT 487
Query 478 GTCTATGGAAGAGATTGCTTGTCAAGTTGGATGTGATTTGCATCAGTTAGGGCCTGTGGT 537
||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || |
Sbjct 488 GTCTATGGAAGAGGTTGCTTATGAAGTTGGATGTGATTTGCATCAGTTAGGGCCTATGAT 547
Query 538 TAAGCGTGTTGTGGATCATTTAGACTTGGAATTTCGAGAGATTGATCTTGTGGGTTTGTT 597
||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||
Sbjct 548 TAAGCGTGTTGTGGATCATCTAGATTTGGAATTGCGAGAGTTTGATCTTGTGGGTTTGTT 607
Query 598 TACCAAGACGGCGACTAATTCACCGAGATTGACTGATGTTGGTAGGGAGAAAAAGGAGAG 657
||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 608 TACCAAGACGGTTACTAATTCACCGAGATTGACTGATGTTGATAGGGATAAGAAGGAGAA 667
Query 658 GATAACAAAGCAAGGAACTTTTCTGATGAATTGTGCATTGAAGTGGTTTTTGTCGACGGG 717
||||| ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 668 GATAATAAAGCAAGGGACTTTCCTGATGAATTGTGCGTTGAAATGGTTTTTGTCGACGGG 727
Query 718 GAGGAGACCAATGCCTTTGGTTGTGGCTGTTTTGGCGTTTGTTGCTCAAGTGAATGGTGT 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 728 GAGGAGACCAATGCCTTTGGTTGTGGCTGTTTTGGCGTTTGTTGTTCAAGTGAATGGTGT 787
Query 778 GAAGGTAAAGATTGATGATTTGGCGAAAGATGCTCGTGTTTCGTTGACTACTTGTAAGAC 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 788 GAAGGTAAAGATTGATGATTTGGCGAAAGATGCTAGTGTTTCGTTGACTACTTGTAAAAC 847
Query 838 GAGGTATAAAGAGTTATCTGAGAAGCTTGTGAAGGTTGCTGAAGAGGTGGGTTTGCCTTG 897
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GCGGTATAAAGAGTTATCTGAGAAGCTTGTGAAGGTTGCTGAAGAGGTGGGTTTGCCTTG 907
Query 898 GGCCAAAGATGTAACTGTGAAGAATGTTGTGAAACATTCAGGGACTTTGTTTGGTTTAAT 957
||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 908 GGCGAAAGATGTTACTGTGAAGAATGTTTTGAAACATTCAGGAACTTTGTTTGCTTTAAT 967
Query 958 GGAAGCCAAGTCCAGGAAAAAGAGAAAACTAGGGACAGGGAATGAATTAGTTAGAACTGA 1017
|||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 968 GGAAGCCAAGTCCATGAAAAAGAGAAAACAAGGGACTGGGAAAGAATTAGTTAGAACTGA 1027
Query 1018 TGGATTTTGTGTGGAGGATATAGTGAGGGACTGCCTAAGCAAAGAATCTATGTATTGTTa 1077
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1028 TGGATTTTGTGTGGAGGATTTAGTGATGGACTGCCTAAGCAAAGAATCTATGTATTGTTA 1087
Query 1078 tgatgatggtgatgatgatgatCGTCAAGATACTATGTCTCGGTATTTTGATGTAGGAGG 1137
|||||||| ||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1088 TGATGATG---ATGCT------CGTCAAGATACTATGTCTCGGTATTTTGATGTAGAAGG 1138
Query 1138 TGAACGTCAGCTTAGTTTATGTAACAAGGATGATAATATATCGGAGAAACAGTTGTCTAC 1197
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 1139 TGAACGTCAGCTTAGTTTATGTAACTATGATGATAATATATCGGAGAATCAGTTGTCTAC 1198
Query 1198 GAAGTATAATGAATTCGTGGATCGAGTTCGTGGTGGGGCTCTTGCGAAAAGAAGTCAGGG 1257
|||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1199 AAAGTATAATGAATTTGAGGATCGAGTTTGTGGTGGGACTCTTGCGAAAAGAAGTCAGGG 1258
Query 1258 AAATAATAAGAGTATGTGGCAAAGGAGATCAGTTTTCGAGA-TGTTTTCAAGTGAATATT 1316
|| || | |||||||||||||||||||||| ||||| | || || | |||| |||| |||
Sbjct 1259 AAGTAGTCAGAGTATGTGGCAAAGGAGATCTGTTTTTG-GAATGGTGTCAACTGAAAATT 1317
Query 1317 GGTGGAAAGGCAAATCGGAATTGAGTCGAAGGCTTTTGCTCAAGGATTTGTTGGAGAAAG 1376
|||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 1318 GGTGGAAAGGGAAATCGGAATTGAGTAAAAGGCTTTTGCTCAAAGACTTGTTGGAGAAAG 1377
Query 1377 ATGTAGGACTTGATGCTTTGCCTCCTTCTTACATAAAGGGTTGCGTTGCAGTTGAAAGAC 1436
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGTAGGGCTTGAAGCTTTGCCTCCTTCTTACATAAAGGGTTGCGTTGCAGTTGAAAGAC 1437
Query 1437 GAAGAGAAAAGATTAAGGCAGCGAAGTTACGGATTAA-GACCATACAACATCCTTCTGGC 1495
|||||||||||||||||||||| ||||| |||||||| | | |||||||||||||||| |
Sbjct 1438 GAAGAGAAAAGATTAAGGCAGCTAAGTTGCGGATTAATG-CAATACAACATCCTTCTGAC 1496
Query 1496 ATTGTTAGTGAAGGTGCGTTGTCTTTGGAGCTTGAACATAGCAAGAAGAAAAGGAAGAAA 1555
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AATGTTAGTGAAGGTGCGTTGTCTTTGGAGCTTGAACATAGCAAGAAGAAAAGGAAGAAA 1556
Query 1556 GGATCTGAAATTGATTGGGAGGATTTGGTTATCCAGACTCTGGTCTTACACAATGTGAAT 1615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1557 GGATCTGAAATTGATTGGGAGGATTTGGTTATACAGACTCTGGTCTTACACAATGTGAAT 1616
Query 1616 GAGGAAGAAATCGAGAAAGGCCATTACAAAACTTTGGTAGAGTTGCATGTTTTCGACTCC 1675
||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1617 GAGGAAGAAATAGAGAAAGGCCATTACAAAACTTTGTTAGACTTGCATGTTTTCAACTCT 1676
Query 1676 GGAGAGGTTTGAATTGAAA 1694
|||||||||||||||||||
Sbjct 1677 GGAGAGGTTTGAATTGAAA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5